Rmax004643.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- -
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000192.1:261695-264515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.018 1.7 9.8 2.2 1 23 103 126 103 126 0.97 2 18 0.0012 0.11 13.5 4.0 2 22 133 153 132 153 0.95 3 18 0.016 1.5 10.0 0.1 1 23 175 198 175 198 0.96 4 18 6.2e-05 0.0059 17.6 1.2 1 23 204 226 204 226 0.99 5 18 4.3e-05 0.0041 18.1 0.2 1 23 262 285 262 285 0.97 6 18 7.5e-06 0.00071 20.4 1.5 1 23 291 313 291 313 0.98 7 18 1.7e-05 0.0016 19.3 1.8 2 23 351 373 350 373 0.93 8 18 3.6e-05 0.0034 18.3 5.1 1 23 379 401 379 401 0.99 9 18 0.00078 0.074 14.1 6.8 1 23 440 463 440 463 0.96 10 18 0.00089 0.084 13.9 4.8 1 23 469 491 469 492 0.93 11 18 8.8e-05 0.0083 17.1 0.4 1 23 531 554 531 554 0.96 12 18 5e-06 0.00047 21.0 3.4 1 23 560 582 560 582 0.98 13 18 0.00051 0.048 14.7 0.6 1 23 617 640 617 640 0.97 14 18 0.0024 0.23 12.6 3.0 1 19 648 666 648 671 0.90 15 18 8.9e-05 0.0085 17.1 0.3 2 23 689 710 688 710 0.97 16 18 0.00018 0.017 16.1 2.8 2 23 716 738 715 738 0.96 17 18 0.0069 0.65 11.1 0.9 1 23 744 769 744 769 0.94 18 18 0.019 1.8 9.8 0.7 3 23 778 799 777 799 0.89
Sequence Information
- Coding Sequence
- ATGACTTCAGTGCATAATTTAGTTATTCCACAATTGGCATCAATCAAACGACaagaaaatgctGTTCAAATTAAACAAGAACCGCCAGCTGCCGAATATGATGAACTTCTTAACATCAAAACTGATGTTGATCTGAATGAATTTGGTGAAATATTTGCCGCAAATTTAGATGCAAACCATGAAATAGGTGACAATACTCAACAgccaaatgaaacatttttcaattcaaattttcaacaaccTTTCACCTATAAAATTGTTAGTGTGAATGTGAAAGGAaatgattcaaacaaatttcaacGTGGATTTCAATGTCGATTCTGTGATAAAATGTTGAGCTCCCGCTTTCGATTAGATTCTCATATCCAAAGCTATCATAATGTggacaatcaaacaaaatgcaaacattgcAATCAAAGTTTTAAGTCATTCAAACAGTTGGATAATCATTTAAGGCGTTGTGGATGGAATGATCGCAAACGAGTTTATGTGAGAAGCCATCCTCATCAACCAGCGGCAAATTTTGAATGCGATATATGCGGTAGCATTCTAAAAAAGTATCGCACTCTTGTCGATCACATGAATGAGGTTCATTCGTCAACATTCACCTTCAAATGTCGAATCTGTGGACGATTATATCCATCCCGATATTATCTGGCAAAACATCTGAATAGACATAAACAAGCCTTTGAAACTACAAATCCAACAATTGGTGATCTAGATGAAGATTTAATGGAACGACGAAAATATGTTCGGAATCATCCTCATCGAccacaaatgaatttcatttgtgacATTTGTGACAAGTCTATATCACGGTTTGATTTACTCGAGGAGCATATGAGCACGAATCATTCAGCTCCTGACAGTTTCCAATGTCGCATATGTAGTCGCGTTTATCCAAATCGgtattatttaaataaacatatgATTCGGCATAAAGATGCCACTGCAAATGGTTTTGAAATTATAGAAGAAGATTTGGATAAGGGTTTGATTGAACGGAACAAATATCAGAGATTGGATCCAAGTCAACGACAAATCAGTTTGACTTGCAACGAATGTGGTAAAATATTCAAGCATCAATATCTTCTTCAGGAGCATAAAGCCTCACGACATTCCGGCGAACatgcatttcaatgcaaaaaatgtaatCGATTTTATCCAAATCGTTACTACTTaacgaaacatttaaaaagacACGAAGAACTTGAACAAAATGGTATATCAGAAGATCAACTTTATGAAGATTTGGATGAAGGTTTAATGGAGCGAAATAAATATGTTAAACCGGAACCAAATCAATTGGGTACATCATTTGATTGTGATGAATGTgacaaaacattttcgaaattttgtcatttgacTGAACACAAACGGTCAAgacatttcaaagaaaatggttttctCTGTCGAAAATGTGGTCGCTCTTATCAATCGAGATATTATTTAGGAAAACATATGAAAAGACATCACAACATCACAGACAGTAATGAGTTAATTATTGATACGCCTGATTGTGATCGTGATCGTGATCTGATTGAACGAAAACCATATATTCGCAGTCATCCACATCAGCCAAAAACGGATTTTGCTTGTGAATCTTGTGGCATGACATACAAAAGATATGATCTTCTCAAAGAACACAtgatttcaaatcattcaagTAATGAAAGTTTCATGTGTAAAGTTTGCCAACGAAAATATCCGAATCGCTATTATTTACAGAAGCACATGAGAAGACACACAAAAGCCAAAACTAGTGAAGAAAAAGATAATAATTTGGACAAAGATCTGATGGAAAGAAATAGATATATTAGGAGTCATCCGCATCGTCCCACATCCAACTTCCAATGTGACATTTGTCAAAAAGTCTTGTCAagttattattcaataagaGAACACATGgaatcaaaacattcaaaaagaTCCAAACAAAAGCACACTTGTccgaaatgcaaaaaaatattcgtttcgAAAAAGCGGCTTGAAAAACATGATAATATGAAACATTCCACTGTTGAAGATGAAAGTATTACAAAATCCAAAGCTCTAACGAAACAAATGTGTTCAATCTGTGGACGACTTTTCCCCGATAGATCAAAACTACTTGCTCATGAGAAAACACATTTAGGGATTTTGACATCTTGCGATATTTGTGGCAAgaaatttttacacaaaaattatCTAAGAAAACACATTAAGAGTGTTCATGCACGCGAAAGACCATTCGCATGTAATGTTGATGGTTGTCAGTGGACATTTGCATATCCACAATGTATGAAAAGGCATCAAGCTCGTAGACATGGAATGGTTACGAATCGAAACGCTTGTCCCATTTGTTCAAAAGAATTTCCAGACAGCACTTATCATCTCAAAAGACATTTGAAAGCACATGCAAACAACACGGCCAAGGAATACATTCCGGTGCCGAAAGTTGATTCAGcacaaactgaaaaataa
- Protein Sequence
- MTSVHNLVIPQLASIKRQENAVQIKQEPPAAEYDELLNIKTDVDLNEFGEIFAANLDANHEIGDNTQQPNETFFNSNFQQPFTYKIVSVNVKGNDSNKFQRGFQCRFCDKMLSSRFRLDSHIQSYHNVDNQTKCKHCNQSFKSFKQLDNHLRRCGWNDRKRVYVRSHPHQPAANFECDICGSILKKYRTLVDHMNEVHSSTFTFKCRICGRLYPSRYYLAKHLNRHKQAFETTNPTIGDLDEDLMERRKYVRNHPHRPQMNFICDICDKSISRFDLLEEHMSTNHSAPDSFQCRICSRVYPNRYYLNKHMIRHKDATANGFEIIEEDLDKGLIERNKYQRLDPSQRQISLTCNECGKIFKHQYLLQEHKASRHSGEHAFQCKKCNRFYPNRYYLTKHLKRHEELEQNGISEDQLYEDLDEGLMERNKYVKPEPNQLGTSFDCDECDKTFSKFCHLTEHKRSRHFKENGFLCRKCGRSYQSRYYLGKHMKRHHNITDSNELIIDTPDCDRDRDLIERKPYIRSHPHQPKTDFACESCGMTYKRYDLLKEHMISNHSSNESFMCKVCQRKYPNRYYLQKHMRRHTKAKTSEEKDNNLDKDLMERNRYIRSHPHRPTSNFQCDICQKVLSSYYSIREHMESKHSKRSKQKHTCPKCKKIFVSKKRLEKHDNMKHSTVEDESITKSKALTKQMCSICGRLFPDRSKLLAHEKTHLGILTSCDICGKKFLHKNYLRKHIKSVHARERPFACNVDGCQWTFAYPQCMKRHQARRHGMVTNRNACPICSKEFPDSTYHLKRHLKAHANNTAKEYIPVPKVDSAQTEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -