Basic Information

Gene Symbol
Snapc4
Assembly
GCA_029041755.1
Location
JAQOWM010000491.1:956505-959489[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 4 4.9e+03 -1.7 0.0 1 17 132 148 132 149 0.92
2 6 0.42 5.1e+02 1.4 0.0 22 46 206 232 193 232 0.82
3 6 2.7e-11 3.3e-08 34.1 0.1 1 45 238 283 238 284 0.96
4 6 1.2e-12 1.5e-09 38.4 0.1 3 43 294 338 292 341 0.96
5 6 2.4e-08 2.9e-05 24.6 0.0 2 46 348 393 347 393 0.95
6 6 6.9e-12 8.5e-09 36.0 0.5 1 44 399 443 399 445 0.93

Sequence Information

Coding Sequence
ATGTCACAAATATCAGTGAATGAGAGTGAATATGACCAATGCTTGATCGATGACACGGATTATGTGCAAGAAGCAGAGACAACGCTCCTCAATTCCAATATAAtctcaattgaaaatgctttGGTTCTTAACAAAAGTATGAGAgtttatttgaacaatttaaaagaGGAATTGGAACGACTAATTGAAGTGTGCGAAcagaaatataaacaaaatgagaaaacacTGTCGGCAAtaaatgatgcaaaaaatgaaccaaaatcATATAAAACCTATTATTTTTGTGGATATCCATTTTTCAAAGATCGACGAGGTGGTGGACCTGCACAATCGGCCGAGTATTTGAAGCGATCAGAGAAAGGCAATGAATTGTTTCCATTGGATATAGAAAAACGTGGCGTATGGTTGCCACGAGACAAAGTTCAATTAGTTCAAGGTGTAAAAGCACAAGTAATTTCGTATTTACAATCACAATGCCGTGCAAAAATGCGAAAAACTGTTGCTAAACGTTGTGCCAGCGATTTGTCAGCTAGAATTCAAAATGAAATTTCGGCATTGGATGGAATGCATTTGgatgaattgattaaaaaaacaaaagatacggatttcaaaataaattggctGAAAATTGCAATGGATGCATTGGAAGAAAGACATTCACCAAATGAATGTATGGCTATGTGGTATGGATATTTAATGCCATCACTAAATCGAAAACCATGGACACAAGCAGAGGAagataaattgttgaatgtttcaaatcAGTTTAATCATCAAAATTGGACGGAAATTGCAAAAGCTGTTGAAAATCGATCGGCTTATCagtgttttgttcattttcaaacgTTGTTTAATAACAAAACTATGCCGAAAAATGTTCGGTGGACACCGGAGCAAGATCGGAAACTAATGGAACTcgttgaaaaatatcgaattggCAACATCATTCCGTGGACGAAAGTTATGGAAAAATGTCCTGGCCGTTCAAAAGAGCAAATCTATAATCGCTACATGTTTTCATTAAACCCGGAGATAAATCGTGCACCATTCAGTGTTGAAGAAGATTGCATTTTAATGGCAGCCATTAAGGAGTATGgtataAACTATCGAGAATTTCCAGCAAATTTACTGCCCGGTCGAAATATGCGACAAATTCGTGAACGATACAATAATGTATTGAAACATGTAAATGTACGTGAGCATTGGAGTGAAGAACatgatataaaattgatgaatttggtTGATAAATATGGTACTTGTGAATGGGTTAAAATATCTGAAGAGATGGTTAGTCATACGCGAACATCGTGTCGACAACGTTATACAACCATCCGAAAATTTCTCGACAAACATCCCGAAAAGAGTGTGTCTGATGTTCCGCGTAGAAAACGTGCATTTTCCACAAATGTTACATCTGATAATTGGATGGAAGCCATAATCGAAGCAAGcaatttcgattcaattcatAACGCCGAAAGTGACGACGATGCGGACATTCAAATGGTTGAATGTAAAGcggcaaaaacgaaaaacatggTTGCAAAGCCAGTAATTCATAACACACcatattttgagttttttaaatattcttttaattttaaattcggTGAAGTGCTTATTGGCAACGAAccattatttgaaaatgtacaaattgcCTGTCAACTATTACAAGCATCAACATTGCCAAAACAGATTAATACTCATAATCCATTATTTAGTAGTTATGTAATACTTCAAAATCCTTGTAAAAAAGTCCAACTTGAACCGGACTTGCTGAAATCACTCATTCAACTGggtcaaaatgattttaattatccggtaaatttcaatacaatccTTGGTATGCGTGCAATGACCGCAATGTTTGCATTAGATaacgggaaaaaaaagagcccAATAAAAAGTGAACCGAAAAAAAGTCCCaagaaaagcaaaattaaACCAGAACCATCAACTGATGAGCATCAAGCATTGACTTTATTTAAAATGCGATTTAAATCCATGTTCAAACAAACGGCCAATCTAGCCAAAATGCAACGTTCTGTTTCATCAGTTTCAATACGCTTGAGAAATCAGAAACGTAAACGAGTTGTATCAAAAGCGACAGCTGCAGCCATAAGTGGAACAATCACAGATTTTCATAATAACGAGACATTGGTGCGATTGATAGAAAATAATCACCAAACTGATAGGGTCGACATGAGTGATAAAGAAGAAATACCCAGAAAAATATGCCGAGTTACAGTTCTTGAGAGCTACACAGTTGGACTAAATAATTCAGATGAAATGGATCCATTGCAATTGCCACCAGTTGCATCAACATCCACTGAAGTAACAAATTGTTATAGATATCGAGTTGAACAATCTGATTCGGTATCAGAGATAAAGATACAACCATACagtgaaagtgaaaatgaaattatgactGATGATCAAAGCACATATTCAAATACAGATTTTGTCATTTGGACACCGGTTGATGTCAGTGATGAATGTACTGGATCTAAcaccaatgaaaaatttcatataaaatga
Protein Sequence
MSQISVNESEYDQCLIDDTDYVQEAETTLLNSNIISIENALVLNKSMRVYLNNLKEELERLIEVCEQKYKQNEKTLSAINDAKNEPKSYKTYYFCGYPFFKDRRGGGPAQSAEYLKRSEKGNELFPLDIEKRGVWLPRDKVQLVQGVKAQVISYLQSQCRAKMRKTVAKRCASDLSARIQNEISALDGMHLDELIKKTKDTDFKINWLKIAMDALEERHSPNECMAMWYGYLMPSLNRKPWTQAEEDKLLNVSNQFNHQNWTEIAKAVENRSAYQCFVHFQTLFNNKTMPKNVRWTPEQDRKLMELVEKYRIGNIIPWTKVMEKCPGRSKEQIYNRYMFSLNPEINRAPFSVEEDCILMAAIKEYGINYREFPANLLPGRNMRQIRERYNNVLKHVNVREHWSEEHDIKLMNLVDKYGTCEWVKISEEMVSHTRTSCRQRYTTIRKFLDKHPEKSVSDVPRRKRAFSTNVTSDNWMEAIIEASNFDSIHNAESDDDADIQMVECKAAKTKNMVAKPVIHNTPYFEFFKYSFNFKFGEVLIGNEPLFENVQIACQLLQASTLPKQINTHNPLFSSYVILQNPCKKVQLEPDLLKSLIQLGQNDFNYPVNFNTILGMRAMTAMFALDNGKKKSPIKSEPKKSPKKSKIKPEPSTDEHQALTLFKMRFKSMFKQTANLAKMQRSVSSVSIRLRNQKRKRVVSKATAAAISGTITDFHNNETLVRLIENNHQTDRVDMSDKEEIPRKICRVTVLESYTVGLNNSDEMDPLQLPPVASTSTEVTNCYRYRVEQSDSVSEIKIQPYSESENEIMTDDQSTYSNTDFVIWTPVDVSDECTGSNTNEKFHIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-