Basic Information

Gene Symbol
ARID5B
Assembly
GCA_029041755.1
Location
JAQOWM010000706.1:399869-403287[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.9e-15 2e-11 44.6 0.3 2 89 200 279 199 279 0.89

Sequence Information

Coding Sequence
ATGCATTCTCGGTCGAATGTTGCAGTGATCAGTTTTCCGCGTTATTGCCGCTATCGAGCTACTTTAAAGCGGCTCGAGGGTGTCAGCGATGAATGGCTTCGACGAACATTAGTGCAGGCACTGTGCGGTTTCGTTTCATACGGGCCAGATACGAAAGTTATGTTTTGCAAAGAAACATTTGACTATCCTGAATTGGAAACTCATGAGCTTTTGTGTAATCATTTGGCACCAAAATTAAAAGGTCGTCCTCGTGGTCGTCGGAAGAAGGTTCGTTCTGATTCGCCATCGTCTCGTATCCGTTGTGATTCAGCTGGTTCTGATTCATGTGATTCGGAAATATCGGCATGTTCAGTGGAAaaagtttattcaaaatattcaccaCTTTATGTGAAACCAGAATTTAAACAAGGTAAACAGGTGTTGGCTACTCGACCAAAATTGCGTTACAATCCAAGACCGGCACgaagaaatcaaaaatccGAATCAGCTGACGGAATGCGCACATCGAGACGCAACAGTGATAGCAGCGATACAAATGACAGtgattcaaatacaaatacaacaaatcaggacgatgatgaaaatgaatcatcaGAAGAATTGGAATTCATACAAAAGCTAATTGGTTTCCATGAGGCACAAGATTCACAAATACCAAAAGTATTTTGGGTCGGTTTGAAGCGTGTCAATTTGctatcaatttatcaaaaagtaaaaaaaatgggCGGCTATGAAATGGTCACCGAGCGGAAAATGtggaaatatttgtttggTATTGATGGTGGTTACAATTCAATATCTCGGAAAAAGTATGAACGCGCATTGTTGCCATACGAAAAGTATGAATTGCGTAAAGAGTATGCTGAACGACGTGCCAAATATGGTCAAGATGATGATAACggtttttatgattttgaaaagCATCTTGAGGGAAATCGACGACTGACTGAAGCTGAAATACACGAAATTCAACGtcacatcaaaatgaatgaatcaagaAAGGAGAAAGATCAAAATCTTCATGTTGATTTGACACCGGGATCATTACCAGTTACTGTAATTGTTGgtaataaaaaatcaacatcaccatcacaatttcaaattcaacagCCACACACCACAATTACAGTTCATCAAACAACAATACATCCGCAGTCGTCATCAGTGCGAAATAGTCCACCAAATAATCCGATTCAGataacaaatcaaatacaaattcaacaatttacatTACAACCCGGTTCATCACAAAAGGATGACGGAATTAGCGGAAAGCGTAAATCGTCTAGCGAAGATTACTCGGCATGCGATGCACATTTTGTGGCCAATCATTTAGCAAAATTAGGCAAAACAACATCATTACGACAAGTACGTTTGCGACCAGATCGTCAACGCGATCGAAAGTCGGACGCGATGTCACCACCATCGATTGGTTCGATAACGGTATCAGCgataaaaccaaatgaaaaagaaaacattccaTATTTGAGCGgttcaaaaacaacaacaataacaccaATACTCGGCAATAGCAACAAAACGCTACGATATCCCAATCCAAATGATGTCATCGATTTGGACAGTGACAATGAAGACAGTTCACCACAAACCCATATGTATACCTGTGGAATTTTTCCgaatatgaagaaaagaaaattagaaattCTTCGTCAAGGTGGATTAGAAGTTAGAGCCATCAGTAATTCAAGTGGTCCAATGAATAATCAGAATTTCCATGGTTCAACATCGACAACTGTCCCACCGACAACGAAtgtatcaaaattgaaaaacaatttaaaaattagtACCTTATTGACTGATGCACACATTGATTTGCCATTGCCAAAATTCCAATCCCAATGCATGTACAAACGAACAACACGTATTTTTGGCAATCCAAAAGATTTAATACCGCTTCCAATGCAAGCAACcgaattaaattgtattgatttaaCGGTAGAAAAATGTGAACCAAATCTACCAATTGGTCTTCGTTTACCACAATCGACAACCATTCAAAAGGCGCATTCATCGCCCGTATCGACTCTCACCACGTTACCCTCGGCCGCATTGGCTGCACAAAAAATAACCGATCCAAATCTACAAATAACGCTCGTACCTCCATTATCGCATGCGCATAATTCGCATGGTCAACACAACAATAAACGTAAATCATCGGAAACTAATAAATTGTTGAGTGGCATGAAAATGTCACTTCCATCATCGTtaaccacaacaacaattggtaattttccaaatcatCATTCGGATGACACATCGCCCGGTGCCAGCTCATCATCGCCATCATTATTAAATATCtcaaatttatcaacaatcaatgataatttaaaGATCAATCAacttttattacaaaatttccTAAATCAATCAACCGCAAATACCCAACCTGAACAACCGTCAAAGGAGCAAAGCACAAATCCATTCCTGATGTTGGATCCAATGTATCTAACCGGTCTCTACAATAATCCCAAtctttttttccaacaatCACTTCCACAAGAGCTCCTTCAGCTCTATAAAAATTTTCCCCAAGGCTTAGGCATTATTCCGATCTCGAAAAGTTAA
Protein Sequence
MHSRSNVAVISFPRYCRYRATLKRLEGVSDEWLRRTLVQALCGFVSYGPDTKVMFCKETFDYPELETHELLCNHLAPKLKGRPRGRRKKVRSDSPSSRIRCDSAGSDSCDSEISACSVEKVYSKYSPLYVKPEFKQGKQVLATRPKLRYNPRPARRNQKSESADGMRTSRRNSDSSDTNDSDSNTNTTNQDDDENESSEELEFIQKLIGFHEAQDSQIPKVFWVGLKRVNLLSIYQKVKKMGGYEMVTERKMWKYLFGIDGGYNSISRKKYERALLPYEKYELRKEYAERRAKYGQDDDNGFYDFEKHLEGNRRLTEAEIHEIQRHIKMNESRKEKDQNLHVDLTPGSLPVTVIVGNKKSTSPSQFQIQQPHTTITVHQTTIHPQSSSVRNSPPNNPIQITNQIQIQQFTLQPGSSQKDDGISGKRKSSSEDYSACDAHFVANHLAKLGKTTSLRQVRLRPDRQRDRKSDAMSPPSIGSITVSAIKPNEKENIPYLSGSKTTTITPILGNSNKTLRYPNPNDVIDLDSDNEDSSPQTHMYTCGIFPNMKKRKLEILRQGGLEVRAISNSSGPMNNQNFHGSTSTTVPPTTNVSKLKNNLKISTLLTDAHIDLPLPKFQSQCMYKRTTRIFGNPKDLIPLPMQATELNCIDLTVEKCEPNLPIGLRLPQSTTIQKAHSSPVSTLTTLPSAALAAQKITDPNLQITLVPPLSHAHNSHGQHNNKRKSSETNKLLSGMKMSLPSSLTTTTIGNFPNHHSDDTSPGASSSSPSLLNISNLSTINDNLKINQLLLQNFLNQSTANTQPEQPSKEQSTNPFLMLDPMYLTGLYNNPNLFFQQSLPQELLQLYKNFPQGLGIIPISKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-