Qclu032451.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010019097.1:683-4507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 11 7.6 2.1 1 21 270 290 270 291 0.95 2 18 0.00039 0.032 15.5 4.8 1 23 295 317 295 317 0.97 3 18 4.3 3.6e+02 2.8 0.1 3 23 322 342 321 342 0.82 4 18 0.089 7.4 8.1 2.3 1 23 347 369 347 369 0.92 5 18 6.5 5.4e+02 2.3 1.4 1 23 438 464 438 464 0.88 6 18 0.5 41 5.8 2.4 1 23 484 506 484 506 0.99 7 18 0.43 36 6.0 0.4 1 23 530 553 530 553 0.93 8 18 0.00014 0.011 17.0 1.2 1 22 557 578 557 580 0.91 9 18 0.04 3.3 9.2 0.3 2 23 615 637 614 637 0.95 10 18 0.14 12 7.5 0.1 2 23 646 668 645 668 0.95 11 18 0.022 1.8 10.0 0.0 2 23 675 696 674 696 0.92 12 18 1.9 1.6e+02 3.9 1.0 2 23 701 721 701 721 0.93 13 18 0.00053 0.044 15.1 2.7 2 23 728 749 727 749 0.95 14 18 0.00018 0.015 16.6 1.7 2 23 755 777 754 777 0.91 15 18 0.15 13 7.4 0.3 2 23 784 806 784 806 0.94 16 18 0.00048 0.04 15.3 0.5 2 23 844 865 843 865 0.96 17 18 6.7 5.5e+02 2.2 1.8 1 23 898 920 898 920 0.88 18 18 1.4 1.2e+02 4.3 0.9 1 23 927 951 927 951 0.94
Sequence Information
- Coding Sequence
- ATGGATTCGAGTTTGaacgaaaacaataaagtacAGATCGAGGTTGTCAAGTGTGCGCTCTGTGACGATAAGTTTAAGCGAGGAACCAGTTACGTATTTGGGCAACTCTCAGATGTAAATCGGTCGAATGTTTGTGTTAAATGCAAGAATGAGTTCAGAGTCATGTCGGACTTGATACGAATTTGTGATCGATATGCCAAAGATGTGTTGCAGAATAGAAAGAAAGAAAAAAAGCTGCTGAATGGCAAACCTTCGACGGAATCTACCAAGCAAATAGATTCACAAACTGGTCAAAAGATTTGGAAGATCAAACTCGAAGAGTTATGGGTTAAAGAGGAAGATCAGGAATTTTATTGGGGTGGTgactatgaaaaaaatttgggAGCAACAAATGAACTATCATGTATTGAAAACACAAAAAGTAAACTATCGCTTTAtaacaatgaaaatgaaagtattgaaaaagaaataattgaacatGAAACAATTGAACAGGGTGCAGTTGAAGATGAAAGtattaaacaagaaacaatTGAATATGAAACTGTGGAGCAAGAAACAATTGAAGATGAAACAGTTGAAGATGAAACACTTGAAGATGAAACACTTGAAGATGAAACACTTGAAGATGAAACACTTGAAGATCAAACAATTGAAGATGAAACAATTGAAgatgtaacaataaaaaaggaagTAATAGAAAGTGAAACTACTAAAAATATGACATCTGAAAATATGACAACTGAAGATGcaataactaaacaaaaaacaaacaatgaaGTTGCAGaaataaaccaaaacaaaCGGTACAAATGTCAAAGATGCGGAGCATCGTACCGCTTCCTAAAGTATTATCACAACCACGTGAAGATATGCGGACGACACAAATGTCGATTCTGCGGTAAAACCTTCTCGACAATACATGCATACGAGAAACATATCAAGGCGCACCGTCAAGGAATTTGCCAGCAATGCGGAGAGCAATTTGGTTCGAGACTTCTACGAGAAGAACACGAGCAAGGCCACAAAAATGCTGAGTACAAATGCACTGAATGcggttttacttttattttggaaaagtaTTTGAACTTTCATAAGAAGCTTCACATTCGTGAAACGATCaaacaaaaccaaacaacaaacaaactgaacaaaacaacaataaaagacGAAACCATTAAGAAAATCATGAGAAGTAACGATATCGATGACCTGAAGGAAAACGCTGGGAGAAATGGAgaagaaacaattgaaaatgatTGTCAGATAAGCGATAATGGTCATGATGACTGTGGAGAAACAActaaaACCTTCAATTGTTTGATATGTCCCCAATTCACTCGATTGTTTTCCTCGAAAATCGACTTGCACTCACATTATGCCTCGTCTCATTCGATAGAATTCTTCACAGACATGGAGATGAACAATATTACCAAACAGTCGACAAGATACACGTGCAAAGTCTGCAGTTTTGTGATGGACTCGGAGTCGAAGTTCTCGACTCACAAGAAAACTCACATGCACGTCAAGGGAAATCCTTCAACGGTGACTTTCGCAAACCTCGCGGAAGCGAAACGGTCTCTCTTTTACAATTGCCCGATTTGTTTGTTCATCACGCAAACAAAGTCGGACTTCGGCAAACATTTGGCGCAGACtcacaaaaatcaatttgtttgtGTTCATTGTGAGACGTCCTTTGATAGAAACGATTCATTGAGAAAACATATTGTCGACTTCCATGACCAAACTGAGTTGCTATCGAAGAGACcttgtaaaatttttcatgtcaAATCGAAGGGAACGACTAAATCCGCGGATGTGTCTCGGATAGATCAGGAAATGTCGTGCTCACTTTGTCACCTCAATTTTGAGTCTTCGGAAGAGCTCGGGGCACATTGGCTCCGGGGACATAAGAAAAAGGAAGCGAAAATGATACGGTGTCCGATTTGCAAATATCTCGTGCCATCGGAAGAGGCTTTTCGGAGGCATAAGCTAAAGTGGCATGAGAGTGCAGAGTACATTACTTGTGATATATGCCAAAAGAAGTTCGCCAACGAAGTCGACATGGCGATGCATGCCGAAGAACATGCCAGCAATCGGAAGTGTCCCCATTGTGAAGAATTCGTTTTAAAGTCGGATTATGTGAAACACGTCAAGGAACATCCTGCTGAGAAGCATTTAATTTGCCAGGTATGCGGGAAGCATTTTGAGAAAACTAGCCACTTGTTGAGCCACCAACAAGCCCATGAGAAAAGGGGCACCATGTGCGAGATCTGCGGGTTGTCATTCCAATCAAAGAGTCACCTACAGTTGCATATCACCTTCAAACACAACAAGGAACGAGAACGAGTCTGTCCTCTGTGTAAAGAGACATTCCCAAAATTGGCCATCTTCAAGAAgcactatttaaaaattcacggACGAGAAGAGTTCGACAAGGTGTTCACACACTTGTGCGAGATGTGTGGAGATTGCTTTGAGACAGAGGAGATCATCGAGCGCCACCGGAAAGTTTGCCAGAAACTAATCTCGTGCAAGATTTGCGGGTTGCAATTTTCGAGTGAGAAGCTGTACAATAGGCACGTACAAAACCACGAGAGAAAGCAATTCAAGTACTGCATCACCTGCGATGGATACTTCGAGAAATTAGCGTTCTTCCAGCACGTGAGGAAACATAAGAACGTGACGTTCTTCCGATGCGAGATTTGCTACTTGAAGTTCTTCGAGAGGGAAGCTTGCGTGAACCACATCGTCCGCCATCCGGAGAAGCCTCGGATTTACGCTTGCCCCGTTTGTCCTTACAAAACGTTCCTTCGGTTATTCCGTTTGAAGGTACATTTGCATACCGCTCACTACTGGCCCGAGGAGTTTTACAAGGATGCCATGAAGGACAAGTTTTGGGAAGACGAGAAGATCGGGAATTATGCTGTTGTTTTTGAGGTGCCTCCTGAGCTAATGCACAGGAAAAAATGTAGAACAAATCTAGCCAACTTGGATCAGAACACATCTATTAATCAAACTTACATTTGGATCGGAAGAGACGGAAGCGAAGTTGCCAGGGAAGTAAACGGAGTCAtcgaatattttcataaagaCGACAGCGAAATTGAGTATGAGCCAATTCAAGAAGACTTACCAGAAGACGGAACGAATACTGTCAGCCCTTGCACTGAAATAAGTAGGAAAagaaagttagaaataaatgaacttaACGATAATGGTGTTAATAGTGAAGATGAAGCTGAgagaaaatttataagaatTCAGCCAGAGGTGGTCGAGAATGAAGCAAATGTGCAATGCGCAGCTGTGGAATATTCATTATCGACTCTCTTCtatgatgatgaagatgatggAATGATTGAAAATTTGGCTGAATTCTTGCCGATAtga
- Protein Sequence
- MDSSLNENNKVQIEVVKCALCDDKFKRGTSYVFGQLSDVNRSNVCVKCKNEFRVMSDLIRICDRYAKDVLQNRKKEKKLLNGKPSTESTKQIDSQTGQKIWKIKLEELWVKEEDQEFYWGGDYEKNLGATNELSCIENTKSKLSLYNNENESIEKEIIEHETIEQGAVEDESIKQETIEYETVEQETIEDETVEDETLEDETLEDETLEDETLEDQTIEDETIEDVTIKKEVIESETTKNMTSENMTTEDAITKQKTNNEVAEINQNKRYKCQRCGASYRFLKYYHNHVKICGRHKCRFCGKTFSTIHAYEKHIKAHRQGICQQCGEQFGSRLLREEHEQGHKNAEYKCTECGFTFILEKYLNFHKKLHIRETIKQNQTTNKLNKTTIKDETIKKIMRSNDIDDLKENAGRNGEETIENDCQISDNGHDDCGETTKTFNCLICPQFTRLFSSKIDLHSHYASSHSIEFFTDMEMNNITKQSTRYTCKVCSFVMDSESKFSTHKKTHMHVKGNPSTVTFANLAEAKRSLFYNCPICLFITQTKSDFGKHLAQTHKNQFVCVHCETSFDRNDSLRKHIVDFHDQTELLSKRPCKIFHVKSKGTTKSADVSRIDQEMSCSLCHLNFESSEELGAHWLRGHKKKEAKMIRCPICKYLVPSEEAFRRHKLKWHESAEYITCDICQKKFANEVDMAMHAEEHASNRKCPHCEEFVLKSDYVKHVKEHPAEKHLICQVCGKHFEKTSHLLSHQQAHEKRGTMCEICGLSFQSKSHLQLHITFKHNKERERVCPLCKETFPKLAIFKKHYLKIHGREEFDKVFTHLCEMCGDCFETEEIIERHRKVCQKLISCKICGLQFSSEKLYNRHVQNHERKQFKYCITCDGYFEKLAFFQHVRKHKNVTFFRCEICYLKFFEREACVNHIVRHPEKPRIYACPVCPYKTFLRLFRLKVHLHTAHYWPEEFYKDAMKDKFWEDEKIGNYAVVFEVPPELMHRKKCRTNLANLDQNTSINQTYIWIGRDGSEVAREVNGVIEYFHKDDSEIEYEPIQEDLPEDGTNTVSPCTEISRKRKLEINELNDNGVNSEDEAERKFIRIQPEVVENEANVQCAAVEYSLSTLFYDDEDDGMIENLAEFLPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -