Basic Information

Insect: Quadriops clusia
Gene Symbol: -
Assembly: GCA_033557875.1
Location: JAWQRP010006272.1:867-6234[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00018 0.015 16.6 0.3 1 23 191 214 191 214 0.97

2 18 2.8 2.3e+02 3.4 1.9 1 23 345 368 345 368 0.86

3 18 0.13 10 7.6 2.3 1 23 376 399 376 399 0.98

4 18 0.15 13 7.4 0.8 2 23 406 426 406 426 0.97

5 18 0.00019 0.016 16.5 0.2 2 23 433 453 432 453 0.97

6 18 0.2 16 7.0 2.1 2 23 459 480 459 480 0.96

7 18 0.00027 0.023 16.0 1.7 2 23 488 509 487 509 0.97

8 18 1.7e-05 0.0014 19.8 3.3 2 23 516 537 516 537 0.97

9 18 0.00024 0.019 16.2 0.6 1 23 543 566 543 566 0.97

10 18 0.068 5.7 8.5 0.1 1 20 686 705 686 707 0.94

11 18 1.6 1.3e+02 4.2 1.0 1 23 851 874 851 874 0.90

12 18 0.22 19 6.9 1.8 1 23 882 905 882 905 0.98

13 18 0.038 3.2 9.3 1.0 2 23 912 932 912 932 0.97

14 18 0.0016 0.13 13.6 0.1 2 23 939 959 938 959 0.96

15 18 0.00047 0.039 15.3 0.5 3 23 966 986 965 986 0.97

16 18 1.5e-05 0.0012 20.0 3.1 2 23 994 1015 993 1015 0.97

17 18 0.00014 0.012 16.9 2.3 2 23 1022 1043 1022 1043 0.97

18 18 0.00049 0.041 15.2 0.9 1 23 1049 1072 1049 1072 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00018	0.015	16.6	0.3	1	23	191	214	191	214	0.97
2	18	2.8	2.3e+02	3.4	1.9	1	23	345	368	345	368	0.86
3	18	0.13	10	7.6	2.3	1	23	376	399	376	399	0.98
4	18	0.15	13	7.4	0.8	2	23	406	426	406	426	0.97
5	18	0.00019	0.016	16.5	0.2	2	23	433	453	432	453	0.97
6	18	0.2	16	7.0	2.1	2	23	459	480	459	480	0.96
7	18	0.00027	0.023	16.0	1.7	2	23	488	509	487	509	0.97
8	18	1.7e-05	0.0014	19.8	3.3	2	23	516	537	516	537	0.97
9	18	0.00024	0.019	16.2	0.6	1	23	543	566	543	566	0.97
10	18	0.068	5.7	8.5	0.1	1	20	686	705	686	707	0.94
11	18	1.6	1.3e+02	4.2	1.0	1	23	851	874	851	874	0.90
12	18	0.22	19	6.9	1.8	1	23	882	905	882	905	0.98
13	18	0.038	3.2	9.3	1.0	2	23	912	932	912	932	0.97
14	18	0.0016	0.13	13.6	0.1	2	23	939	959	938	959	0.96
15	18	0.00047	0.039	15.3	0.5	3	23	966	986	965	986	0.97
16	18	1.5e-05	0.0012	20.0	3.1	2	23	994	1015	993	1015	0.97
17	18	0.00014	0.012	16.9	2.3	2	23	1022	1043	1022	1043	0.97
18	18	0.00049	0.041	15.2	0.9	1	23	1049	1072	1049	1072	0.96

Sequence Information

Coding Sequence: atGGAAGTTTGCAGAACTTGTTTGACTCGTACTAGCGATTTGTTGCCATTGTTCAAGAATGGAAACCTTCCGGATATTATAAAAACCCTTTCATCAATCGACgtAACAGAATGTGAACAGCTATCCCAATCAATATGCAAAAGTTGCgtgaaaaatctaaaaaactTTGACTTGTTCAGAAAGTTAATCCTGGAAAGCGATCGCACCTTAAAAGCGATgtcaaaacaatcaaatattaaagtcGACTTCGATGACTTTGAAATGAATTACATGAAAGAAGAAGTTATCGAAGTTAAAGTAGAAAAACAATTAGAGCATGATCCCATAGAACAAATAGATTGCAAAGAGatattaacaaacaatttggTGAGTGAAAATGAAGGGGATAAggcaatgaaaataaataaagaaggagAAAATTCGAATCTGCAGTGTAATATGTGCTCTTATAACACCCAATTGGAAGAGTATCTCATTATTCATAAAGTTAGGTATCATTTAAACGAAAAGTCGCTACTCTCGGAAAAATGTGACGATGATATCTTGGACGAGCTTAAAGCCAAACAGCTGTACAAATGCGACATATGTGGGTACAGAGCTATAACTAGAACTGCTTTGAAAAGTCACATGGCAAGAAATCATCCGAATTGTAAAAAACAAGATAGTTCGCTTTCTTCACTGACATCATCTAgattcaaaatgttattggAATCGAAACAAGAAAGTGAAATAATAGAGCAAACTAAAGTGAAGAAcgtaactaaattaataaagcaacagttttcaaataaaaacgaGACAATAGCAGACGGGGATTATTCAAAACTATacgaagaaataattgaaacagaCAAGGAAATAAGTAAAGCAGACGAAGAAATAAGTAAAGCAGGCAAAGAAATAACTAAAGCATTTGAAGTAGTAACTAAAGCAGACAAAGAAATAACTAAAGCAGACAAAGAATTAACTAAAGCAGacaaagaaatatgtaaaGCAGTCAAAGGAATAACTAAAGCAAGCGAAGAAAAACCATACAAGTGCAAAAAATGCAATCACCGAGGACCGACAAAAGTTGCGATTTATAGCCATTTTGCAAGGATGCATCAGGAGAGGAAAGAAAAGATTTACAAATGCCTCCTCTGTGACTACATTACAATTAAGTACAGTAGACTGAATTACCACCAGAAAAGCAAGCACCAAGAGATGAAACGTGAGACGTGCAACATTTGTAAGAGAGACGTCTTAAAAGCGAACATGATAAAGCACTTAAGGACTCATTCGCTCGACAAGAATACTACTTGTGAGATTTGCGGGAAAGTCGTAACGAAATCTTCACTGTACGTGCACATGCAGATGCACgagaaacaagaaaatgtttgTCAGTTTTGCGGGTTGCGTTTCGAATATAAGGGGCAATATATGTGCCACATAAAGTCCCATcgagagaagaagaaaatattggaaTGCAATGTATGCGAAAAAACTTTCCACGCTAAAAAAGCGTTACAAAGGCATTTAAATAGTCATTCCGGGTATAAACCTGAGGTGTGCGACTTCTGCAACAAACGGTTTTCAACCCCGCACACTTTGAAGCAGCATATAAGACAACACACCAATGAAAAACCATATACTTGTGACTTGTGTCCTGAAGCCTTTCGGCAGAGGCTATCGTTGAGAAATCACGCGAAATCCAAACATAATATCAACCTACCGTTACTCGTAACAGAATGTGAACAGTTACCTCGATCGATATGCAAAGATTGCATGGCAAATCTAATCAACTTTGACTCGTTCAGAAAGTTAATATTGGAAAGCGATCGCACCTTAAAAGCACAAATAAAACACTCAAAAATTAAAGTCGATTATGATGATAACTTTGAAATGATATCCATGAAACAGGAAGTATTCGAATCCCAAGTAGAAGAGCTACTGGAGCTTACCGTATTAGAAGAGTGTCTGATTAGTCATAAAGTTCGGaaacatttaaatgaaaagtCGCTACTCTCGGAAAAGTGCGACGATGAAATCTTGGACGAGCTCAAAGCCAATCATCTGTATAAGTGCGACATATGTGGGTACAGAGCTATAACCGACACTGCTTTGAAAAGCCACACATTTATTTCAGATATAGACACCACGGAGGATGGCGTTACACCTTCGAGGAAAGTAGATGGAGGATATTCAGAAATAGAGGTATTGACAGACAATTTGGAGAGTGATAATGAAGAGGATAATGCagtcataataaataattcaaaagaaGGAGATAATTTGAGCCTACAATGCAATATGTGCCGTTATATCATGCATTCAGAAGAGTCTTTGATTCATCATAAAGTTCGAAagcatttaaacaaaaagtcaCTACTCTCAGAAAAATGCGAGAATGATATCTTAGaggaagaagaaatttcaaatataagcatggcaaaacaaacatttacttCAGGTATAGAATCCACGGAGGATGCTTCTATACCTTCCAGGAAAGAAGATGAAGAACATTCAGAACTAAAGGAAGTGTTCACGAAAGAATGTAAAGAAAAGCTGTACAAGTGTCAAAGGTGCAATTATCAAGCGCCGACAAGAAATGCGTTATATAGCCATTTTGGAAGGATGCATCAGAAGAAGGAAGAAAAGATTTACAAATGCCTCCTCTGTGACTTCATTACGATTAAGTATGGTAAACTGAATTATCACCAGAAGAGCAAGCACCTAGGGATGAAACGTGAGACATGCAACATTTGTAAGAGAGTCGTCTTAAAAGACAACATGACAAAGCACTTAATGACTCATTCTATCGACAAACAGACTACTTGCGAGATTTGCGGAAAAGTCGTAACAAAACCTTCGCTGTATGTGCACATGCAGATGCACGtgaaacaagaaaacattTGTGAGTTCTGCGGGTTGCGTTTTGAGTATAAGGGGCAATATTTGCGTCATATAAAATCCCATcgagagaagaagaaaatattggaaTGCAATGTATGCGAAAAAACTTTCCACCGCAAAGACACGTTACGAAGGCATTTGAATAGTCATTCAGGATATAAACCCGAGGTTTGCAAATTCTGCAACAAACAGTTCTCATCCCGTTACGCTTTGAAACAACATGAAAGACAGCACACCAACGAAAAACCATACACTTGTGACTTGTGCCCTGAAGCCTTTCGGCAGAGGTTATCGCTGAGGAATCattcaaaatcaaaacataaaatcaatCTACCGTTGCTCGTGAGCTATAACACCAAACGtgataagtaa
Protein Sequence: MEVCRTCLTRTSDLLPLFKNGNLPDIIKTLSSIDVTECEQLSQSICKSCVKNLKNFDLFRKLILESDRTLKAMSKQSNIKVDFDDFEMNYMKEEVIEVKVEKQLEHDPIEQIDCKEILTNNLVSENEGDKAMKINKEGENSNLQCNMCSYNTQLEEYLIIHKVRYHLNEKSLLSEKCDDDILDELKAKQLYKCDICGYRAITRTALKSHMARNHPNCKKQDSSLSSLTSSRFKMLLESKQESEIIEQTKVKNVTKLIKQQFSNKNETIADGDYSKLYEEIIETDKEISKADEEISKAGKEITKAFEVVTKADKEITKADKELTKADKEICKAVKGITKASEEKPYKCKKCNHRGPTKVAIYSHFARMHQERKEKIYKCLLCDYITIKYSRLNYHQKSKHQEMKRETCNICKRDVLKANMIKHLRTHSLDKNTTCEICGKVVTKSSLYVHMQMHEKQENVCQFCGLRFEYKGQYMCHIKSHREKKKILECNVCEKTFHAKKALQRHLNSHSGYKPEVCDFCNKRFSTPHTLKQHIRQHTNEKPYTCDLCPEAFRQRLSLRNHAKSKHNINLPLLVTECEQLPRSICKDCMANLINFDSFRKLILESDRTLKAQIKHSKIKVDYDDNFEMISMKQEVFESQVEELLELTVLEECLISHKVRKHLNEKSLLSEKCDDEILDELKANHLYKCDICGYRAITDTALKSHTFISDIDTTEDGVTPSRKVDGGYSEIEVLTDNLESDNEEDNAVIINNSKEGDNLSLQCNMCRYIMHSEESLIHHKVRKHLNKKSLLSEKCENDILEEEEISNISMAKQTFTSGIESTEDASIPSRKEDEEHSELKEVFTKECKEKLYKCQRCNYQAPTRNALYSHFGRMHQKKEEKIYKCLLCDFITIKYGKLNYHQKSKHLGMKRETCNICKRVVLKDNMTKHLMTHSIDKQTTCEICGKVVTKPSLYVHMQMHVKQENICEFCGLRFEYKGQYLRHIKSHREKKKILECNVCEKTFHRKDTLRRHLNSHSGYKPEVCKFCNKQFSSRYALKQHERQHTNEKPYTCDLCPEAFRQRLSLRNHSKSKHKINLPLLVSYNTKRDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -