Qclu002976.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010000558.1:8965-16629[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.003 0.25 12.8 2.5 1 23 27 50 27 50 0.97 2 26 1.8 1.5e+02 4.0 2.6 2 23 116 138 115 138 0.95 3 26 0.0011 0.088 14.2 0.9 1 23 163 186 163 186 0.97 4 26 0.5 41 5.8 1.2 1 23 353 376 353 376 0.94 5 26 0.11 9.3 7.8 2.1 1 23 384 407 384 407 0.98 6 26 3.1 2.6e+02 3.3 0.5 2 20 414 431 414 434 0.85 7 26 0.046 3.8 9.0 0.2 2 23 440 460 439 460 0.96 8 26 8.3 6.9e+02 1.9 2.2 3 23 467 487 466 487 0.91 9 26 0.0046 0.38 12.2 1.6 1 23 494 516 494 516 0.98 10 26 1.7e-06 0.00014 23.0 0.5 2 23 523 544 523 544 0.97 11 26 6e-05 0.0049 18.1 1.7 1 23 550 573 550 574 0.96 12 26 0.099 8.2 8.0 0.7 1 23 631 654 631 654 0.97 13 26 0.047 3.9 9.0 0.8 1 23 660 683 660 683 0.98 14 26 0.35 29 6.3 0.1 3 23 718 737 716 737 0.94 15 26 0.00063 0.052 14.9 3.4 2 23 772 793 771 793 0.97 16 26 0.00025 0.021 16.1 2.4 2 23 800 821 800 821 0.97 17 26 0.23 19 6.8 0.0 1 15 827 840 827 843 0.81 18 26 2.1 1.7e+02 3.8 0.8 2 23 925 947 924 947 0.91 19 26 0.00045 0.037 15.4 0.5 1 23 972 995 972 995 0.98 20 26 3.6 3e+02 3.1 1.6 1 23 1068 1091 1068 1096 0.87 21 26 0.32 26 6.4 2.8 2 23 1129 1149 1129 1149 0.97 22 26 0.0013 0.11 13.9 1.7 2 23 1156 1176 1155 1176 0.96 23 26 0.0015 0.13 13.7 0.9 2 23 1182 1203 1182 1203 0.97 24 26 0.025 2.1 9.8 2.7 2 23 1211 1232 1210 1232 0.96 25 26 2.9e-06 0.00024 22.3 4.0 2 23 1239 1260 1239 1260 0.97 26 26 0.00029 0.024 16.0 0.6 1 23 1266 1289 1266 1289 0.97
Sequence Information
- Coding Sequence
- AtgcatttaaacaaaaagtcGCTTCTCTCAGAAAAATGCGATAAAGATATCTTGACGGAGTTGAAAGCGAAAAAATTGTACAAGTGCaacatttgtaaatatagAACTATAACTGCAAATACTTTCAAGAAGCACAGGTTAAGAATTCATCCGGactATATAAATGACGCGAGCCAAACATTTACTTCGGGTGTAGACTCCAATGAAGATGGCTTTATACCTTCGAGGAAAGAAGATGGAGAATATTCAGAACTAGAGGTATTAACAGACAATTTGGAAGGTGACACTGAAGAGGATAAAGcactaataatatataattcaaaAGAAGGAGGCAATTCGAAGCTACAATGCAATATGTGTTCTTATAACACACATTCGGAAAAGTATTTGATTAGTCATAAACTTCGGATGCATTTAAACAACAAGTCGCTACTCTCAGAAAAAAGCGACGATGATATCTTGGAGGAGCTGAAAGCCAAACAACTGTACAAGTGCAAAATTTGTGAGTACAGAACTATAACTGCAAAAGCTTTGAACAACCACAGGTTAAGAAATCATCTGGATTGTcaaaaacacaatatttttaatgtaagcGAGGCGAACCAAACGTTTCATTCAGGTGTAGACTCCATGGGGGATGGATTTATACATTCGAATAAAGACGATGGAGAATATTCAAAACTAGAGATATTTACAGATAATTTGGAGAGTGACAACGAAGAGGATGAGGCactaataatagataattcAAAAGAAGGAGGCAATTCAAAGGTACAATGCAATATGTGCTGTTATAACACACATTCggaaaagtatttaattagtCATAAACTTCGGAtgcatttaaacaaaaagtcaCTACTCTCAGAAAAATGCGACAATGATATCTTGGAGGAGCTGAAAGCCAAATATTTGTACAAGTGCGACATTTCCCCCACGGAGGATGGTTTTATACCTTCAAGGAAAGAAGATGAAGAATGTTCAGAACTAGAGGTATTAACAGATAATTTGGAAGGTGAGAATGAAGAATTCACGAAAGAACGAGAAGAAATGCTGTACAAGTGCCCTAGATGCAATCATCGAGCGGCAACAAAACGTGCGATTCAAAGTCATTTTTCGATGGCACatcaggaaaataataaaaagattttcAAATGTCTCCTGTGTAAATTTGTAGCAGTTAACAGTAGGCAATTGTATTCTCACAGAAAGACCAAGCATGAAGAAATGAAACGTGAGACTTGCAATATTTGCCACAAAGTCGTCTTAAAAGCGAACATGGCGAAACACAGATGGATTCATTCTGACAAGCAGACTACTTGTGAGATTTGCGGGAAAGTTATATCGAAAACTTCCGTGTACGTGCACATGCAGATGCacaagaaagaagaaaacatttgTGAATTTTGCGGGTTGAGATTCGAGTTCAAGGGAAAATATCTGTGTCACCTGCAAAATCATCGAGAGAAGAAGAGACGTTTTCAATGCAATCTGTGTGAGAAAACTTTTTACATGAAActtatattacaaaatcatATGAACAGTCATTCCGGACATAAGCCGGAAGTGTGCAACATCTGTGATAAAGGGTTTGCATCCAAGTATTCTCTGAAGCAACATATAAGGCAGCATACCAATGAAAAACCTTACACTTGCGACTTGTGCCCTGAAGCTTTTCGACAGAGGTCATCGTTGAGGATGCATGCGAAATCCAAACATCATATTAAGCTGCCGTTGCTTGTGAACTATAACAAAGGCCTtaccaatGCTAAAGAAAAGTTTAGTTCAGTCATAGACCCCACGGAGGATGACGTCGTACCTTCGAGCGAAGCAAATGAGGAACATTCAGGACTAAAGGGAGTATTAACGCAAGAAATCGATGAAAAACTGTATAAATGCCCAAGATGCAGTTATCGAGGGGCGACGAAAGATTCGATTCAAAGCCACTTTTCAACGgtacatgaaaataaaaaaatttacaaatgtctACTCTGTGACTTCGTCGCAGATAAGAACAGTAATCTGTATTATCATCGGATAACTAACCACGAAGAGACGAATCGTGAGGCGTGCAATGTTTGCCACAAAGTCATCTTTAAACACAACATGCCAAAACACTTAATAACTCATTCTCTCGATAAAAACGTTAATTGTGAGATTTGCGGAAAAGCTATAGCGAAATCTTCAGTATACGTGCACATGAAGATGCAcgagaaagaagaaaacatttgTGAGTTTTGCGGGTTGCGATTCGAGttcaaaggaaaatatttgtgtCACCTAGTATCCCAtaaggagaagaaaaaaagtttgcaGTGTAATCTGTGCGAGAAAACTTTTCACGAGAAACGCATGTTACAAAGGCATTTGAACAGTCATTCCGGGTATAAACCCGAGGTGTGCAAAATCTGCAACAAACGGTTCTCGACCAAGTATATTGTGAAACAACATATGAGAAAGCACACCAATGAAAAACCTTACACTTGCGACTTATGCCCTGAAGCCTTTCGACAGAGAAACTTGATCTTGGAAAGCGATCGCATCTTAAAAGCGAagttaaaacaatcaaataataaagttaactATGACGATTTAGAAGCGATTTCCATAAAGGTGGAAGTTGTTGAACTCAAACCAGAAAAGTCAGTGGAGCATGAACTTTTAGAACAAGAAGATTGCAAAgagatattaataaacaattttgagaGTGACAATGAAGGTAATGGGGCAATGACAATGAAGAATTCAAAAGACAAAGGAAATTCCAGTCTGAAGTGCAATATGTGCTCTTATAACACGCAGTATGAAGAGAATTTACTTATGCATAAAGTTCGAAaccatttaaacaaaaactcaTTACTCTCGGAAAAATGCAACAATGATATCATGGATGAGTTTAAAGTCAAACAATTGTATAAGTGCGACATTTGTGGGTACAGAACTATAAGTGACACTGCTTTGAAAAACCACGTGAGAAGAAATCATGCAGATTGTGAAAAACTGGAAGGTTCACAACAGGTTTCAAATCAAAGGAAGGTGCAGCAAAAGTTTACTTCGGTTGTAGACTCCACAGAGGATGCCTTTATACCTTCGGAGAAGGCAGATGAGGAATATTCAGACCTCcaggaaaaatatttagacCTTCAGGAAAAATATTCAGACCTACAGGAAGAATGCTCAGAAGGAAACGAAGAAAAACTGTACAAGTGCCCAAGATGCAATCATCAAGGGGTATCAAAAGTTGAAATCCAAAGCCACTTTTTGCAAGAACATCAAGAGAAggaacataaaatttacaaatgcaTCCTGTGTGATTTTGTCGCCGTTAATTATAAGCAACTGTATTATCACAGGACGAGCAAGCATAAAGGGATGAAACGTGAGACATGCAGTATTTGCAAAAAAGTTCTCTTTAAACACAACATGGTAAAACATGTAATGACTCATTCTGATGACAAGCAGACAACTTGCGAGATTTGCGGGAAAGTCTTAACTAAATCTTCACTATACAACCACATGCAGCACCACAAGAAACAAGAAAACGTTTGTCAGTTTTGCGGGTTGCGATTCGGATTCAAGGGAAACTTTTTGAACCACTTAAAAACCCAccgaaagaagaagaaaatgttgaaatgttATGCTTGCGAGAAAAGTTTTCCTGATAAATGCAGATTACAAAAGCATGAGAACAGTCATACGGGGTTTAAACCAGAAGTGTGCAAATACTGCAATAAAGGATTCTCGTCCAAGCACAATCTGAAACAACATATAAGGCAGCACACCAATGAAAAACCTTATACTTGCGACTTGTGTCCTGAAGCCTTTCGGCAGCGGTTATCTTTGAGAAATCACGCGAAATCCAAGCATAATATTACCCTACCCTTGCTCCTGGGTTATAACAGCACAGCCATCAAagactaa
- Protein Sequence
- MHLNKKSLLSEKCDKDILTELKAKKLYKCNICKYRTITANTFKKHRLRIHPDYINDASQTFTSGVDSNEDGFIPSRKEDGEYSELEVLTDNLEGDTEEDKALIIYNSKEGGNSKLQCNMCSYNTHSEKYLISHKLRMHLNNKSLLSEKSDDDILEELKAKQLYKCKICEYRTITAKALNNHRLRNHLDCQKHNIFNVSEANQTFHSGVDSMGDGFIHSNKDDGEYSKLEIFTDNLESDNEEDEALIIDNSKEGGNSKVQCNMCCYNTHSEKYLISHKLRMHLNKKSLLSEKCDNDILEELKAKYLYKCDISPTEDGFIPSRKEDEECSELEVLTDNLEGENEEFTKEREEMLYKCPRCNHRAATKRAIQSHFSMAHQENNKKIFKCLLCKFVAVNSRQLYSHRKTKHEEMKRETCNICHKVVLKANMAKHRWIHSDKQTTCEICGKVISKTSVYVHMQMHKKEENICEFCGLRFEFKGKYLCHLQNHREKKRRFQCNLCEKTFYMKLILQNHMNSHSGHKPEVCNICDKGFASKYSLKQHIRQHTNEKPYTCDLCPEAFRQRSSLRMHAKSKHHIKLPLLVNYNKGLTNAKEKFSSVIDPTEDDVVPSSEANEEHSGLKGVLTQEIDEKLYKCPRCSYRGATKDSIQSHFSTVHENKKIYKCLLCDFVADKNSNLYYHRITNHEETNREACNVCHKVIFKHNMPKHLITHSLDKNVNCEICGKAIAKSSVYVHMKMHEKEENICEFCGLRFEFKGKYLCHLVSHKEKKKSLQCNLCEKTFHEKRMLQRHLNSHSGYKPEVCKICNKRFSTKYIVKQHMRKHTNEKPYTCDLCPEAFRQRNLILESDRILKAKLKQSNNKVNYDDLEAISIKVEVVELKPEKSVEHELLEQEDCKEILINNFESDNEGNGAMTMKNSKDKGNSSLKCNMCSYNTQYEENLLMHKVRNHLNKNSLLSEKCNNDIMDEFKVKQLYKCDICGYRTISDTALKNHVRRNHADCEKLEGSQQVSNQRKVQQKFTSVVDSTEDAFIPSEKADEEYSDLQEKYLDLQEKYSDLQEECSEGNEEKLYKCPRCNHQGVSKVEIQSHFLQEHQEKEHKIYKCILCDFVAVNYKQLYYHRTSKHKGMKRETCSICKKVLFKHNMVKHVMTHSDDKQTTCEICGKVLTKSSLYNHMQHHKKQENVCQFCGLRFGFKGNFLNHLKTHRKKKKMLKCYACEKSFPDKCRLQKHENSHTGFKPEVCKYCNKGFSSKHNLKQHIRQHTNEKPYTCDLCPEAFRQRLSLRNHAKSKHNITLPLLLGYNSTAIKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -