Qclu015669.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- Gzf1
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010005792.1:1-9129[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2 1e+02 4.5 0.6 2 11 90 99 89 109 0.91 2 17 6.2 5.1e+02 2.3 6.7 1 16 149 163 149 165 0.82 3 17 0.0012 0.099 14.0 7.6 1 23 178 201 178 201 0.96 4 17 0.00014 0.011 17.0 3.2 1 23 212 234 212 234 0.97 5 17 9.3e-05 0.0077 17.5 0.9 3 23 245 265 243 265 0.96 6 17 5.4e-08 4.5e-06 27.7 0.9 1 23 271 293 271 293 0.98 7 17 1.9e-06 0.00016 22.8 0.2 1 23 299 321 299 321 0.98 8 17 5.6 4.6e+02 2.5 0.2 1 8 327 334 327 348 0.91 9 17 0.94 77 4.9 6.3 1 23 469 491 469 491 0.93 10 17 2.9 2.4e+02 3.3 0.5 2 15 496 509 495 517 0.77 11 17 4.9 4e+02 2.7 5.9 1 14 555 567 555 571 0.82 12 17 0.0023 0.19 13.1 2.6 1 23 584 607 584 607 0.95 13 17 8.1e-05 0.0067 17.7 1.0 1 23 618 640 618 640 0.97 14 17 0.00015 0.013 16.8 0.8 3 23 651 671 649 671 0.96 15 17 2.7e-07 2.2e-05 25.5 2.1 1 23 677 699 677 699 0.97 16 17 1.9e-06 0.00016 22.8 0.2 1 23 705 727 705 727 0.98 17 17 0.00019 0.016 16.5 0.4 1 21 733 753 733 754 0.96
Sequence Information
- Coding Sequence
- AAACAGACAAAAGAAGAAGAGCCAACTAAGTCAAAACTATGTAAATCCCTCAAAGCTTTAAattccaataaaaaattgcaaaagaaaCAGAAACAAAGGAAACAGACACGAATAAAAACTACAAGTTCTGCTAAAGTTAGCACTCTCCAAGAACGACCATACACTTATAATAGATTTGAAAGAGAATTCACGTGCATTAAGTGTGGCTTCAAATGTCGCACTAAGATAGAAATATACGACCATTTAGATGATCATGAAGAAGAAGTTAGCTGTCCGCAGTGTACGAAAGTATTTAAAGGGATTTACAAATGTGCCCTTCATTCTATCGAACACAACAAAGACTTCTATAGTTGCCCTAGTTGTGAACACACAGTGAATGTACTGGGTCAAAGTCGAGGGGCATTAAAGAATCATGTTAAAATAACTCACTTTAGGCAATATAACTATATTTGTAAGCACTGTGGGAAAGGTTTTCAATGTTCTACGTTTTGTAAAGAACATGAAAACAATCATGTGGATAATACACCAAAGTTTAAATGTGTGGTATGTAATAAAAGATTTATACATTCAAGACATTTACGTAGCCATCAACTGCATAATCATCAAATATCTACGGGAGGACTTCATAAGAAATACGAGTGCACTGTCTGccaaaaaaaatacacaaaaatttgCAACCTTAAGAGGCATATGGTCGTCCATTCCAAAGATTccgaacaaacaaaacatttgtgTGACATCTGTGGCAAGGGTCTTGCTTCTCAAGATAAGCTAAAGCTCCACTATCGCACGCACACGGGAGACAAACCCTATTCTTGCTCCTACTGCGACAAGAGCTTCGCTCGCCAGGATAACTTAAAAGAACACGAAAGAGTGCACACTGGCGAAAAGCCGTTCGTTTGCGAAGTCTGTAATAAAGGCTATACTCAAAAAGGGCCATTGACAATTCACATGAGGACTCACAGTGGTGAAAGACCTTACGTTTGTCACTTATGTAACAAGGGAGAACAAAACGTGCAATATACGTTTGTGCAAAAAAGCGAAAATTTCGAATATTATGCGCCACTTATATTGAAAGAGGAAATACCGATTGAAGCAAATTCAAGTGAAAAATCGAACTTAAATTCGATTTTGCCAATACAACCGAAAAACAAACGGAAGCCCACAAACGACAAGGGTGATGCATTTCTCCGAGAATGTCGTCCTTTTAAAGCTAAGAAGCAGACAAAAGAAGAAGATTCAACTAAGCCAAAACTACGTAAATCCCTCAAAGCTTTGAattccaataaaaaattgcaaaagaaacagaaacaaaagaaacagaCAAGAATAAAAACTACAAGTTCTGCTAAAGCCAGCACTCTCCAAGAACGACCATACACTTATGATAGATTTGAAAAAGAATTCACTTGCACTAAGTGTGGCTTCAAATGTTGCACTAAGAAAGAAATATACGACCATTTAGATGATCATGAAGAAGAAGTTAGCTGTCCGCAGTGTGCGAAAGTATTCAAAGGGATTTACAACTGTGCCCTTCATTCCATCGAACACAATAAAGACTTCTATAGTTGCCCCAGTTGTGAATACACAGTGAATGTACTGGGCCATAGCCGAGTGCGATTAAAGGCTCATGTTAAAATATCTCACTTGAAGCAATATAAGTATATTTGTAAGCACTGCGGGAAAGGTTTTCAATGTTCTACATTTTGTGAAGAACATGAAAACAATCATGTGGATAACACACCGAAGTTTAAATGtgttgtatgtaataaaagatTTATGTATTCATCACGTTTACGTTACcatcaaatttataatcatCAAATACCTACGGGTGGACTTCATACGAAACACAAGTGCAGTGTCTGCCAAAAAGAATACATAACAATTCGCAATCTTGAGAGGCATATGGTCGTTCATTCCAAAGATTCCGCACGAACAAAGCATTTGTGTGACATCTGTGGCAAGGGTCTTGCTTCTCAAGAGAAGCTAAGGCTCCACTATCGCACGCATACTGGCGAGAAACCCCACTCTTGCTCCTACTGCGACAAGAGCTTCGCTCGCCAGGATAACTTAAAAGAACACGAAAGAGTGCACACCGGCGAAAAGCCGTTCGTTTGCGAAGTCTGTAATAAAGGCTATACTCAAAAAGGACCGTTGACAATTCACATGAGGACTCACAGTGGTGAAAGACCTTACGTTTGTCACTTATGTAATAAGGGTTTTGTGTCCAATACTGCTATGAAATTGCACATGAATTCATGTCGTGGAAGCAGcccttga
- Protein Sequence
- KQTKEEEPTKSKLCKSLKALNSNKKLQKKQKQRKQTRIKTTSSAKVSTLQERPYTYNRFEREFTCIKCGFKCRTKIEIYDHLDDHEEEVSCPQCTKVFKGIYKCALHSIEHNKDFYSCPSCEHTVNVLGQSRGALKNHVKITHFRQYNYICKHCGKGFQCSTFCKEHENNHVDNTPKFKCVVCNKRFIHSRHLRSHQLHNHQISTGGLHKKYECTVCQKKYTKICNLKRHMVVHSKDSEQTKHLCDICGKGLASQDKLKLHYRTHTGDKPYSCSYCDKSFARQDNLKEHERVHTGEKPFVCEVCNKGYTQKGPLTIHMRTHSGERPYVCHLCNKGEQNVQYTFVQKSENFEYYAPLILKEEIPIEANSSEKSNLNSILPIQPKNKRKPTNDKGDAFLRECRPFKAKKQTKEEDSTKPKLRKSLKALNSNKKLQKKQKQKKQTRIKTTSSAKASTLQERPYTYDRFEKEFTCTKCGFKCCTKKEIYDHLDDHEEEVSCPQCAKVFKGIYNCALHSIEHNKDFYSCPSCEYTVNVLGHSRVRLKAHVKISHLKQYKYICKHCGKGFQCSTFCEEHENNHVDNTPKFKCVVCNKRFMYSSRLRYHQIYNHQIPTGGLHTKHKCSVCQKEYITIRNLERHMVVHSKDSARTKHLCDICGKGLASQEKLRLHYRTHTGEKPHSCSYCDKSFARQDNLKEHERVHTGEKPFVCEVCNKGYTQKGPLTIHMRTHSGERPYVCHLCNKGFVSNTAMKLHMNSCRGSSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -