Qclu003574.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- prdm10
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010000698.1:9655-14370[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.019 16.3 0.4 2 23 255 277 254 277 0.96 2 12 0.001 0.086 14.2 0.5 1 23 375 397 375 397 0.98 3 12 0.00046 0.038 15.3 1.6 1 20 401 420 401 422 0.94 4 12 3.3e-06 0.00028 22.0 1.9 1 23 428 450 428 450 0.98 5 12 0.017 1.4 10.3 3.0 1 22 454 475 454 475 0.92 6 12 9.3e-05 0.0077 17.5 1.4 1 23 484 506 484 506 0.98 7 12 5.3e-06 0.00044 21.4 0.3 1 23 525 547 525 547 0.98 8 12 0.0051 0.42 12.0 1.9 1 23 552 574 552 574 0.98 9 12 9.9e-06 0.00082 20.6 1.0 1 23 581 603 581 603 0.98 10 12 0.00045 0.037 15.3 1.0 1 23 608 631 608 631 0.96 11 12 0.0046 0.38 12.2 0.4 2 23 634 655 633 655 0.96 12 12 0.00038 0.032 15.6 0.7 1 23 660 683 660 683 0.98
Sequence Information
- Coding Sequence
- atgaatCTGCTTCCAGCAGAAACGGCAGGTAAATTCCACATCAGCTCTAACAGGGCAGGTTActtatcaaaattgtttacagATTCTTTATGTGCCATTTGTGGGGGCAACCATAGCTCTTCGAACTGCAGCTTGTTCGAAATCACTAATCATGTACCTGACAATAACGTGCTGTCCAAGGCACGCCTTACTTTGCCAAAGATCTTTAAAATCGAAGCAATGATCGAAGGGCACAGCTCCATAGTTGCCGTCGACTTCGTGTCCAAGGGAACACAGTTCGGACCCCTCGAAGCCAACCGGATATTTTCTTTGAACCCTGACATTACATTCTCGCTCAAAATTTTCACCAATGATGAGGATGATTACTTTGGAGAGTACTACTTGAATAACGTCAACGAACATGAATGCAATTGGATGATTTTTGTTACTCCAGCACAGAGTGTCGAGGAACAAAACTTGATTTGCTATCAGGATAAAGAAAAGATTTACTACCTTTCAATCAGAGACATTCAGCCAGGCGAACACTTAAAAGTCTGGTATGCTCCTCTTTATgccaaaaaaatgaataagcaCATATTAGAAAGGAAAATTTTGGAAGATGTTCCAAGAGACGCTGGAATAGACATAAGGACTTTAGTGAAGAAGCAACAAAATATCCCCGAGAGAGAATCTTGGACTTGTAAGTTTTGCAGTATTATGGAACCAGATGTTGTCAAGTTTGCCAAGCACATGTCTGAACATTATGCAATGCAACTTCGAAACCAATGCGAGATATGTAAAGCAACATTTACGGTGCGGAAGAGTTTAgcaaaacatataaaattagtgcacAGCAACAGCGTCGTTACTTACCCAACTGCCAATGAAAAACCAATCAACAAATCAAGGGAAAAAGATACCATCGATAAAGACACATTAGTAGGAGGCCCTTTACTAAACGATATTCTAGCCGATAGCATGGACAATACAAACGTATTACTGCCACAAACTGACTTCGACATGGGATTAGGAAACCAAAATATGATGTTGGAGACGGAAAATCTGAATGTAGAGAATCTGTTGAGTGAAAATGTTAAAGAGTTGGATcactttaactttgaaattgaCGAAAATCAGGAGCAGTTTATTTGTGATATTTGCTTGAAGGAATTCTCAAAACTGAAAGCCTTATACATCCACTTAAACAAGCATACGGGAAAGTATACTTGCGAAATATGCAGGAAGATTTTCGCTCGGAAAGAAAACTTTCACGCTCACGAGTGCATTTCGTCAAACGAAACCTTTCCATGTACCATATgctcaaaaacattttctctTAGGAAATACCTTATTAGACACATGAAGAGCCATGAAAGGACCTTTCAGTGCGAAAAGTGCCATAAGAGTTACACTTCGTCGGCAATTTTAAATGATCACACTTGTACAGGTGGACCTCCTAGGGAAAAAGAGCACAAATGCGAAATTTGCGGAAAGGTGTTTCTGAAGGAAGCTTACTTGAGAAAACACTTGAAAATACATTCAGATAAGAAAAaagataaagagaaaaaagatGAGAATGGTTCCCAAAATTCATACATTTGTGAAATATGTTCCGCTACCttcaattatatttctaatttaaaagtgCACATAAGAACCCATTCTGATCCTACATACAGTTGCGATATGTGTGATAGTAAGTTTTTTAGGAAAGAAACACTTGATAATCATAAGGAGACTCATAACGACAAGGGAAATGAGTTTCAGTGTACAGTGTGTGACAAAGGTGTTAAATCCAAAAAGAAACTTCAAGCACACATGAAACTCCACGATCCACCGATGTTTCCTTGCAGCGATTGTTCGATGACTTTCACCTTAAAAGTTAACATGAAAAAACATTACATGAACATCCATAAAAAGAAGTGTTCCATCTGCAACATAACCTTTGCAACTCATGACGAGGTCCTTGCTCATAAAGCTGTACATTTTGATTCGTTTTACACTTGTCCTGTTTGCGAAAGGAATGTCAAGTTAAGGAGTTCGATGCGAAGGCATATCAAGAAAGTTCACCcagaatataatattacagaaaatgaattgaaaaagTGCCGagtaaataatgcaaataaagaGGTCCTTAAGGATGAAACTGAAAAAGAAGATAATGTAGATGAAGTTTCTATAGATATGTCGATAGACAACGAAATAGCccaaaataatttggaattgAGTAGTGGTGTGGAAACAAATAATTCGTCGCAAGACAACTATCCCGTTAtggagaaagagaaagaattTTCCACGATGTTACCAGACAGTTACGAATCCACGGATTTGTCCAACTTAGATATGAATGAtcaaattgataaaacaatTGTAATGGATCAGGCCGATTATGATGTTGATGGATTTGATGAAATAGATTTGAATATTGCAGAGAAACTGGTGAACAATGAAGAAGTGTCCCCGAATTTTGGggtgaataattttaatcagcAAAGTGATCTGGGAATACCAATCACTAGTAATTTAGAGCAAACCGAGAACAttcttgattttaataatttggaaatggAATTTGGCAGACCTTTTACTTCAGCACAACCTGAGTTACCAGCACCAGTTTGTGTGTCAATGCCTGAAATAATGCAGGATGTAACATTAgGGGAAAATGCCTATATATTGGACAATGGCACAATTATTGAACCTCGGGATCAGGGTAATGTTGTAGTCTATATTTTAGATAGAaaatttgatacaaataaCGGGGTCAATAAAAATGGTTTAGTTTAA
- Protein Sequence
- MNLLPAETAGKFHISSNRAGYLSKLFTDSLCAICGGNHSSSNCSLFEITNHVPDNNVLSKARLTLPKIFKIEAMIEGHSSIVAVDFVSKGTQFGPLEANRIFSLNPDITFSLKIFTNDEDDYFGEYYLNNVNEHECNWMIFVTPAQSVEEQNLICYQDKEKIYYLSIRDIQPGEHLKVWYAPLYAKKMNKHILERKILEDVPRDAGIDIRTLVKKQQNIPERESWTCKFCSIMEPDVVKFAKHMSEHYAMQLRNQCEICKATFTVRKSLAKHIKLVHSNSVVTYPTANEKPINKSREKDTIDKDTLVGGPLLNDILADSMDNTNVLLPQTDFDMGLGNQNMMLETENLNVENLLSENVKELDHFNFEIDENQEQFICDICLKEFSKLKALYIHLNKHTGKYTCEICRKIFARKENFHAHECISSNETFPCTICSKTFSLRKYLIRHMKSHERTFQCEKCHKSYTSSAILNDHTCTGGPPREKEHKCEICGKVFLKEAYLRKHLKIHSDKKKDKEKKDENGSQNSYICEICSATFNYISNLKVHIRTHSDPTYSCDMCDSKFFRKETLDNHKETHNDKGNEFQCTVCDKGVKSKKKLQAHMKLHDPPMFPCSDCSMTFTLKVNMKKHYMNIHKKKCSICNITFATHDEVLAHKAVHFDSFYTCPVCERNVKLRSSMRRHIKKVHPEYNITENELKKCRVNNANKEVLKDETEKEDNVDEVSIDMSIDNEIAQNNLELSSGVETNNSSQDNYPVMEKEKEFSTMLPDSYESTDLSNLDMNDQIDKTIVMDQADYDVDGFDEIDLNIAEKLVNNEEVSPNFGVNNFNQQSDLGIPITSNLEQTENILDFNNLEMEFGRPFTSAQPELPAPVCVSMPEIMQDVTLGENAYILDNGTIIEPRDQGNVVVYILDRKFDTNNGVNKNGLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -