Qclu000233.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010000029.1:11161-15671[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.0097 17.2 0.1 5 23 13 31 11 31 0.96 2 12 2 1.7e+02 3.9 1.4 2 16 69 83 68 88 0.87 3 12 8.1e-05 0.0067 17.7 1.8 2 23 126 147 125 147 0.97 4 12 9.8e-05 0.0081 17.4 4.8 1 23 150 172 150 172 0.97 5 12 0.53 44 5.7 0.6 2 20 179 197 178 199 0.92 6 12 3.4e-05 0.0028 18.9 1.1 1 23 205 228 205 228 0.96 7 12 0.0006 0.049 15.0 1.3 1 23 233 255 233 255 0.97 8 12 0.099 8.2 8.0 0.3 3 23 265 284 264 285 0.93 9 12 7.2e-06 0.0006 21.0 3.6 1 23 291 313 291 313 0.95 10 12 2.3e-05 0.0019 19.4 0.1 1 23 319 341 319 341 0.97 11 12 1.2e-07 1e-05 26.6 0.4 1 23 347 369 347 369 0.99 12 12 4.5e-05 0.0037 18.5 2.5 1 23 375 398 375 398 0.95
Sequence Information
- Coding Sequence
- ATGGAAATTTCTACTAGACATAGGAAAGAAAGCGAAATTTGCGGCAAGAAGTTTATACAGCGAGGTAGCTTTAATGTTCACATGCTAAGGCACAAGAAGGAGAGGCCAATCGACCATTGCATCCTGAAACCAGCAATAGAAAGAAAACCCAAGTCGTCTTATCCCAAATCGCCCGGCAACAGACGGAACCGAAATAGAAAATGGGAATGTAAAACTTGCCTGGAAAAGTTTTCCACGCAAAACGCATTTATCTTTCACGAATGTGACAATcaagaagataaaaatgaaagcCACCAAAATGAGAAAACACCAAAACCTACAAAAAAACACGGAGCATCTAAACAAAACAAGGGAAAAAAATCTCACCAAGACTTAACATGCGATGTCTGttcaaaaaagttttcaaagaAGGGAATGTACCTCAAGCATTGGAAAACTCACGCCGAACACAGTTGTCCACATTGTGAGAAAAAATTTTCCGTCTATAGGTCGTTTAGAAGACATATTTTAGTGCACAAAAAAGCCAAATCTTTAAAGTGCGAAATTTGctgtgaattatttaaaactgaagTGAAATTGAAGAAGCACGAAGAAATATGTCGCATGGGAGGTTTTATTTGCGAACTCTGCGAGAAGATTTATAAAACGAAAACTCAACTGAACAATCACGTTAAGTCGCAGCATTTAGGCTTGACCTATGATTGCGCACATTGTGAGAAGAAATTCAAGTCCCGAGTTTCATATGGAGCCCATGTCAAGATACACGATCCAAATTacgtaaaatacaaaatttgtccGATTTGTAACAAGATGGTGAGCGCTCTGAGCTTTCAATCCCATTTAAGCAAGCACAGAGAGAGGGAAACGAAGTTCTTGTGCCAAGAATGCGGCAAAACGTTTAAGCACCGCGATGGCTTTAATACGCATTTACGCAACCACCTTGGCTTAAAACCGTTCGCTTGCGACATCTGCGGGAGAGCTTTCTCATCGAAGGTTCCTTTAAGCGACCACCGAAAAATTCATACTAATCAAAAGGATTACGAATGCGAAATTTGCGGTAAGAAGTTTATACAGCGAGGTAGCTTTAATGTACACATGCTAACGCACAAAGATGAGCGGCCGTACGCATGTTGTATATGTGATAAACGTTTCATTACTAAGGGCTATTTGACTTCTCACAGGACGAAGGCTCACTCACAAATTCGGCAGAAGGAATAA
- Protein Sequence
- MEISTRHRKESEICGKKFIQRGSFNVHMLRHKKERPIDHCILKPAIERKPKSSYPKSPGNRRNRNRKWECKTCLEKFSTQNAFIFHECDNQEDKNESHQNEKTPKPTKKHGASKQNKGKKSHQDLTCDVCSKKFSKKGMYLKHWKTHAEHSCPHCEKKFSVYRSFRRHILVHKKAKSLKCEICCELFKTEVKLKKHEEICRMGGFICELCEKIYKTKTQLNNHVKSQHLGLTYDCAHCEKKFKSRVSYGAHVKIHDPNYVKYKICPICNKMVSALSFQSHLSKHRERETKFLCQECGKTFKHRDGFNTHLRNHLGLKPFACDICGRAFSSKVPLSDHRKIHTNQKDYECEICGKKFIQRGSFNVHMLTHKDERPYACCICDKRFITKGYLTSHRTKAHSQIRQKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -