Basic Information

Insect: Quadriops clusia
Gene Symbol: -
Assembly: GCA_033557875.1
Location: JAWQRP010006276.1:5844-7313[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.4e-05 0.0029 18.9 6.5 1 23 108 130 108 130 0.98

2 13 0.00021 0.017 16.4 2.3 1 23 136 158 136 158 0.98

3 13 8.5e-05 0.0071 17.6 3.3 1 23 163 185 163 185 0.98

4 13 0.058 4.8 8.7 1.8 1 23 191 214 191 214 0.96

5 13 2.1e-05 0.0018 19.5 0.1 1 23 220 242 220 242 0.97

6 13 7.1e-05 0.0059 17.9 0.5 1 23 248 270 248 270 0.97

7 13 4.8e-06 0.0004 21.6 1.7 1 23 276 298 276 298 0.97

8 13 5.8e-05 0.0048 18.2 0.4 1 23 312 334 312 334 0.99

9 13 0.00058 0.048 15.0 0.5 1 23 339 361 339 361 0.96

10 13 0.00011 0.0088 17.3 1.6 1 23 367 389 367 390 0.95

11 13 0.0067 0.56 11.7 0.7 1 23 395 417 395 417 0.98

12 13 0.00069 0.057 14.8 1.0 1 22 423 444 423 444 0.97

13 13 6.8e-05 0.0057 17.9 0.6 1 23 451 473 451 473 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.4e-05	0.0029	18.9	6.5	1	23	108	130	108	130	0.98
2	13	0.00021	0.017	16.4	2.3	1	23	136	158	136	158	0.98
3	13	8.5e-05	0.0071	17.6	3.3	1	23	163	185	163	185	0.98
4	13	0.058	4.8	8.7	1.8	1	23	191	214	191	214	0.96
5	13	2.1e-05	0.0018	19.5	0.1	1	23	220	242	220	242	0.97
6	13	7.1e-05	0.0059	17.9	0.5	1	23	248	270	248	270	0.97
7	13	4.8e-06	0.0004	21.6	1.7	1	23	276	298	276	298	0.97
8	13	5.8e-05	0.0048	18.2	0.4	1	23	312	334	312	334	0.99
9	13	0.00058	0.048	15.0	0.5	1	23	339	361	339	361	0.96
10	13	0.00011	0.0088	17.3	1.6	1	23	367	389	367	390	0.95
11	13	0.0067	0.56	11.7	0.7	1	23	395	417	395	417	0.98
12	13	0.00069	0.057	14.8	1.0	1	22	423	444	423	444	0.97
13	13	6.8e-05	0.0057	17.9	0.6	1	23	451	473	451	473	0.98

Sequence Information

Coding Sequence: ATGGGAAGTGAACAAGTTGAAtctgaaaaagaagaaataatagtttttgtaCACAGTGACAACGAAGATATTACACAAGGAGAAAAAGTCGTAAGGGAATTGAATCTAGAAGATGTGGACGagttaaaagaagaattttttgatattgatTATAGCGATGATGACGAAAATGCTGAGAACTACTCCCTTAGCTTCATTGAAGCAAAAGTTAAGGAAGAAAATCACATTGCAACCATTACTCCCCAATCTAAAATAGATCGAAACGTTTGTAATATCGAATCCGATAACTTCAAGCTAACGACAAAAGATCAAACCGGTAAATATCCTTGTTCGTATTGTACTAAAACATTCACAGCAAAACACAACCTAAAAACACATCTTCATACCCATACAGGAGCAAAACCATTCAAATGCTTTTTTTGTGAAGCTGCTTTTATAAATCGTGACCAACTGAAGATACACTTGCGTCATCACACTGGCGAACGATTTAAATGTGACATCTGTCAGATGGCTTGCCGAGACACCAGTAGTCTAAAACGGCACAAACTCACTCATACAGGAAAAAAATACCACAAATGTGAAGAATGCAATCAAGAATTTCTATTACGTGCCCAATTGACTCTTCATGTTAAACGAAAACATTTGTCAGTGAAACCGTTTATTTGCGAATTGTGCGGAAAAGGATTTGCGGAAAATTCACGGTTGATCATCCACATGCGTGACCATAGTGGAGAGAAACCATTCATATGTGATGTATGCGGTCGAGGTTTTGTTGAAAAAgtaacgttaaataaacacaaaaagtaCCACAGTGgggatttaaaatttatgtgtgAGATATGTTCCAAAAGGTTCACAACAAATGCATCACTTCAAAACCATAAAAAATTGCATCTACGAAAAAGCGTCAGAGATGAACAAAGTAACAGTGAGTACCGATGCGACATTTGTGACATGCTTTTTCAAGCAAAAGGATCTTTAACCAAACATATGAAAGTCCACAATACTTCTTATTTCAAATGTGATATTTGTACAAAGTATTTCAcctcaaaagaaaaaatagcagaACATATAGAGGACCATAAAAAAGACTGGCCATTTGAATGCCCGGTGTGTGAGAAAAGGTTCACATCTAAACGAAGTGCGATAACTCACGAGAGACTTCATCATGCCGTAGCAAGTTTTGAATGTGCTTTTTgtaggaaacaatttttaggTCAGGGCAATTTAAGTAGacacattaaattacatataggAGAGGAACATTTCAAGTGTGAATATTGTGAGGAGtcatttttagataaaaagaAGCTGAAGGAACACATAAGAAAAGATTGTGGAACTAGACCTTATTCCTGTGATGTGTGTGGGAAaagatattacattttaaggTCGCTTAATGAACATATGATGAAACATGAAGCTGATACAGaatttaaaatggaattaGAAGAATATGAATCATCATAA
Protein Sequence: MGSEQVESEKEEIIVFVHSDNEDITQGEKVVRELNLEDVDELKEEFFDIDYSDDDENAENYSLSFIEAKVKEENHIATITPQSKIDRNVCNIESDNFKLTTKDQTGKYPCSYCTKTFTAKHNLKTHLHTHTGAKPFKCFFCEAAFINRDQLKIHLRHHTGERFKCDICQMACRDTSSLKRHKLTHTGKKYHKCEECNQEFLLRAQLTLHVKRKHLSVKPFICELCGKGFAENSRLIIHMRDHSGEKPFICDVCGRGFVEKVTLNKHKKYHSGDLKFMCEICSKRFTTNASLQNHKKLHLRKSVRDEQSNSEYRCDICDMLFQAKGSLTKHMKVHNTSYFKCDICTKYFTSKEKIAEHIEDHKKDWPFECPVCEKRFTSKRSAITHERLHHAVASFECAFCRKQFLGQGNLSRHIKLHIGEEHFKCEYCEESFLDKKKLKEHIRKDCGTRPYSCDVCGKRYYILRSLNEHMMKHEADTEFKMELEEYESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -