Qclu011829.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Quadriops clusia
Gene Symbol
ZNF236
Assembly
GCA_033557875.1
Location
JAWQRP010003802.1:1410-5790[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0046 0.38 12.2 0.2 1 23 163 185 163 185 0.96
2 16 0.0018 0.15 13.4 0.2 2 23 191 212 191 212 0.96
3 16 4.7 3.9e+02 2.7 0.4 1 23 218 240 218 240 0.95
4 16 1.3e-05 0.001 20.2 0.5 1 23 255 277 255 277 0.98
5 16 1.3e-06 0.00011 23.3 1.7 1 23 301 323 301 323 0.98
6 16 4.1e-05 0.0034 18.6 0.7 1 23 329 351 329 351 0.98
7 16 0.00029 0.024 16.0 0.3 1 23 357 380 357 380 0.96
8 16 0.073 6.1 8.4 1.7 1 23 390 413 390 413 0.97
9 16 0.001 0.082 14.3 1.4 3 23 501 521 500 521 0.96
10 16 1.9e-05 0.0015 19.7 0.1 1 23 527 549 527 549 0.99
11 16 0.00015 0.012 16.9 3.8 1 23 555 577 555 577 0.99
12 16 0.00039 0.032 15.5 0.1 1 23 589 611 589 611 0.97
13 16 0.00012 0.0096 17.2 1.8 1 23 675 697 675 697 0.98
14 16 2.6e-05 0.0021 19.3 3.2 1 23 703 725 703 725 0.97
15 16 3e-05 0.0025 19.0 0.2 1 23 731 753 731 753 0.95
16 16 0.00056 0.046 15.1 3.9 1 23 759 781 759 781 0.98

Sequence Information

Coding Sequence
ATGAATTCCTGTAAATTTGTTGAGGATAACCAAACTAATGAAACGTTTACTTACATTGCCATTCCGGTGGAAACGTTACAGATGGCAGGAGGGCAAATGGAACCGCACACTATAACGCAAAATTTTACGTTAAAGGCTTTGGCCGATGGAAGGTATTGTTTTGAACCAAGCTTTGAAAATCAGTTGGCTTCGGTCCTTAGTGCCAATAGGTCTGGAATTAATGAATCGTTACAACAAGAAAACCATAGTTTACAAAGAGATAATTTACCGTCCACTAGCCTTCTAAAACCAGAAACCCGAGTAAATCAAGTCAATCAACAGGTTTCCAAGAACaacgaaaataaagtgaacTACCTAAAGCCCAATGCAAGAAAACTAGAAGCACAAAATCAGAAGCCCGAGTTTGCTAAATGCAAAATTTGTTGCGAGGTgatgaaaatttcaaagtacAAGAAGCACATGGAAGAGCACCGCAATAAGAAGACCTTCAACTGTACTCAGTGCACTGAGGGCTTTAACGTAGAAGACAATTACAATCTGCACATGGCACTGCATAAAGAAGGAGACCCGCAATGTCCGGCATGTAACCGAAAATTTCAGAGGTACGCTAGCTTGAAGGCGCACTTAGTTGTGCACCAAGTGGACGAAACGTTCCATTGTTTGGAATGTCTCGCGGAATTCGAAAAAGAGGAGGAATATCTTGACCATCTGGAATACCACAAGGACGATATAGTGACAGTAAATAATTCTGAAAACTCGGAATTTGTGTGTCCTCATTGCAATTATATTTTCACTGATGCTGCAACATACAAGGAACATATAAATGTTCATGTAAAAattaaaaaaatgatatacagCAAAAAATGCCGGAAGAAAAAGATCAATGGGAAGAAAATTGGCCATAAGTGTGAAATATGCCAAAAGAGTTTTTCAAAACTTGGGCTTTTGGAAAGGCACTTACGTATACACAGTGGAGAAAAACCATTTGTAtgTCCATATTGTTCAAGAGGTTTCACCCAAAAAAATACAATGGTGATTCACATGTCCCGCCATACTGGtataaaaccatttaaatGCACGTTATGCCCAGCGAAATTTGGCCAAAGGGGCAACTTGCGGGTTCATGTTGAAAAAACACATACCGCACCAGTTCCAGGAGAAAAACTATATAAATGCATGCAATGCacttgtatatttaaaaaaatagcatCCTTGAATGGCCACATTACAAAAGCACATGCTGGTACCAATCCTCCAGAACCAGAAACCTCCCAAGCTTACGTAGATCCTTCTACAAGTATCATTCGTAAAACTGCCCGAATTGATAAAGAGCGATCCTTTAATGATATTATAGTCACGCAAAAACAAATTGTGGATAAGCACGCTACAGAAGTTGGGGCTAATGAATCCATTGTGTATTTAGCTGGCTCTACGGTCGATGGAAGTGTGAAGCgatatgaaattaaacaaaggaAATGTGGGGAAATTCGGTATAATTTGTGTCCTGCATgttgtaaagaatttaaaaagcCTTCGGATTTGATTCGTCATCTAAGGACGCACACACATGAGAAACCGTTTAagtgTCCAATGTGTAAAGCTGCATTTGCCCTAAAATCAACTTTGGAGGCTCACCTAAACACCCATTATGGAAATAAGGATTATAGATGTGCTGTTTGTTCCAAAATGTTTACTACATTGAAAACATTGAACGTTCACCATAAGAAACATGATAAGGCATTGGTGGCTAAACATGTGAAACCATACAGATGTTCGGAATGTGATAAGTACTTTACTACAGTTGCCGAAGCCAATGTCCATATGGTGATACATGAAGTTCCAAATCTTCAAATGTCACTAGCGGGAGTATCTATAGAAAAAGTTCCTCTGCCAAACTCGGAAACTTTGCAGGGAGGCATGAAACAACCACTTATGGAAACAATCAAtggatCTTTGCAATACATCGAACCCCCAAAACCTAGAACTCCATACGCTAGCCTTGAACCATTCAAAAACAGACCTTTTAAATGCCATGTGTGTAATGCAGCATTTGTAAAGCCTGTTCACGTTAAGAGGCATATGCTCTTGCATTCTGGTCAAAAACTGTTTTCTTGCAGCATGTGTACAAAatcgTTTTACACTTCATATGGTCTAAACCAACATATGAAGTTCCACAACGGCATTAAGAATTTTGCTTGCGAAGTGTGTGGCAAGCGATTTGTAAATAGTAGTATCTTAAAACGACATATGGTACTACATAACCCCGAGAAAAAGTATATCTGTCCTTATTGTAAAAAGAGGTTTAAAACAGTAACATTATGCAGGCGTCACATAAGAGTTCATAAAAGGGATTTAGATaatgcGAATGAAATAGGAGAAGTAATACGAATGGAACCTATTGAAGCTAGTAATAAATCTCCAAATCTTGAAGGAAATGATGTGTTGCAAACCACAGTCCCAGAACCTAAGGGAGATCCTCCACCATATGAAAAAGTGGCCAACGTGTCAATGGCAATAGATCCTAATCAGTTTATTAATATCGATACAACGGAGAAAAACGCCGAAGAAAATCCGAATAATTACCAGAcaatctttattaattatgatgaCTTACAGGGTCTGAATAGTTCTAATTTATACAATACATTGCTGTCGCAACTAAAGGTTCAAGTAAGTATCCAATTAATGTTAAGAGCAATATTAGTTCACCTTTACGagttattagtttaa
Protein Sequence
MNSCKFVEDNQTNETFTYIAIPVETLQMAGGQMEPHTITQNFTLKALADGRYCFEPSFENQLASVLSANRSGINESLQQENHSLQRDNLPSTSLLKPETRVNQVNQQVSKNNENKVNYLKPNARKLEAQNQKPEFAKCKICCEVMKISKYKKHMEEHRNKKTFNCTQCTEGFNVEDNYNLHMALHKEGDPQCPACNRKFQRYASLKAHLVVHQVDETFHCLECLAEFEKEEEYLDHLEYHKDDIVTVNNSENSEFVCPHCNYIFTDAATYKEHINVHVKIKKMIYSKKCRKKKINGKKIGHKCEICQKSFSKLGLLERHLRIHSGEKPFVCPYCSRGFTQKNTMVIHMSRHTGIKPFKCTLCPAKFGQRGNLRVHVEKTHTAPVPGEKLYKCMQCTCIFKKIASLNGHITKAHAGTNPPEPETSQAYVDPSTSIIRKTARIDKERSFNDIIVTQKQIVDKHATEVGANESIVYLAGSTVDGSVKRYEIKQRKCGEIRYNLCPACCKEFKKPSDLIRHLRTHTHEKPFKCPMCKAAFALKSTLEAHLNTHYGNKDYRCAVCSKMFTTLKTLNVHHKKHDKALVAKHVKPYRCSECDKYFTTVAEANVHMVIHEVPNLQMSLAGVSIEKVPLPNSETLQGGMKQPLMETINGSLQYIEPPKPRTPYASLEPFKNRPFKCHVCNAAFVKPVHVKRHMLLHSGQKLFSCSMCTKSFYTSYGLNQHMKFHNGIKNFACEVCGKRFVNSSILKRHMVLHNPEKKYICPYCKKRFKTVTLCRRHIRVHKRDLDNANEIGEVIRMEPIEASNKSPNLEGNDVLQTTVPEPKGDPPPYEKVANVSMAIDPNQFINIDTTEKNAEENPNNYQTIFINYDDLQGLNSSNLYNTLLSQLKVQVSIQLMLRAILVHLYELLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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