Basic Information

Insect: Quadriops clusia
Gene Symbol: -
Assembly: GCA_033557875.1
Location: JAWQRP010014927.1:1420-3147[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.87 72 5.0 0.2 5 23 46 65 37 65 0.90

2 13 0.0017 0.14 13.5 6.8 2 23 180 201 179 201 0.97

3 13 5.8e-07 4.8e-05 24.4 0.3 1 23 207 229 207 229 0.97

4 13 1.5e-05 0.0013 20.0 0.5 1 23 235 257 235 257 0.98

5 13 1.1e-05 0.00093 20.4 1.4 1 23 263 285 263 285 0.99

6 13 1.1e-06 9.2e-05 23.6 0.1 1 23 291 313 291 313 0.97

7 13 6.8e-05 0.0056 17.9 1.1 1 23 319 341 319 341 0.98

8 13 0.00043 0.035 15.4 6.6 1 23 362 384 362 384 0.97

9 13 1.7e-05 0.0014 19.9 2.6 1 23 390 412 390 412 0.98

10 13 0.00016 0.013 16.7 2.6 1 21 418 438 418 440 0.95

11 13 2e-05 0.0017 19.6 0.2 1 23 446 468 446 468 0.98

12 13 4.4e-05 0.0036 18.5 3.9 1 23 474 496 474 496 0.98

13 13 9.6e-05 0.008 17.5 2.5 1 23 502 524 502 524 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.87	72	5.0	0.2	5	23	46	65	37	65	0.90
2	13	0.0017	0.14	13.5	6.8	2	23	180	201	179	201	0.97
3	13	5.8e-07	4.8e-05	24.4	0.3	1	23	207	229	207	229	0.97
4	13	1.5e-05	0.0013	20.0	0.5	1	23	235	257	235	257	0.98
5	13	1.1e-05	0.00093	20.4	1.4	1	23	263	285	263	285	0.99
6	13	1.1e-06	9.2e-05	23.6	0.1	1	23	291	313	291	313	0.97
7	13	6.8e-05	0.0056	17.9	1.1	1	23	319	341	319	341	0.98
8	13	0.00043	0.035	15.4	6.6	1	23	362	384	362	384	0.97
9	13	1.7e-05	0.0014	19.9	2.6	1	23	390	412	390	412	0.98
10	13	0.00016	0.013	16.7	2.6	1	21	418	438	418	440	0.95
11	13	2e-05	0.0017	19.6	0.2	1	23	446	468	446	468	0.98
12	13	4.4e-05	0.0036	18.5	3.9	1	23	474	496	474	496	0.98
13	13	9.6e-05	0.008	17.5	2.5	1	23	502	524	502	524	0.99

Sequence Information

Coding Sequence: atGGCGAGTTGGAATAAAGCTTACATTAAGAttgaaatagaagaaaattcaattttggaAGAAACCTTTAAAACGGAGGAATATTCTGATGTGAAGCCATATCTAGATTGTAatcctaataatattaattgcatAATTTGCGAAGAAATATTCGAATTTGAATTACAACTGCAAAGGCACGTTGAAAGATATCATGGCAATCACCCCCTACGCTTCGAAGCCCAACACATCCATCATCAGTTCAAAGTTGAGGACGAAACAAAAGACATATTCTTATGTAAAAACGCTTCAGACTTAGTTTTATCTGCAAAATCTAGTGAAccagaaaagaaaacaaactctCCTAATAACCCTCCCAATGAACCCATAAATACATCTTTGCCTCAACCTtcaaatgaagttttaaatgtacACGTGACTGAACTTTTAAATGTACCTGAGACTGAACCTTTAAACACACCATTGTCTCAACCGTTAAAGAAACTTTCCGaccaattaaaacaatcaaaaaaacaaaattctaaaaCCAAACGATTAACTTGTGAAATATGTGGACACACCTGTGCGCGAGCCTGTCACCTTAGACAGCATCTAAAAGTGCATACCCGAGAAAAACCGTTCTCTTGCACAATCTGCGGCAAAGCTTTCGCCCGCTCAGATACTCTCAAAAGTCACGAGAATATCCACAAGGGCGTTAAACCATTTTCCTGCGACGTCTGTAATAAGAATTTTGTTTGGAAGAGCGATTTAACGGTGCACCTCAGGACCCACACAGGAGAAAGACCGTATTCTTGCTCAGTTTGTGGgcaaaaatatatcaaaagcgGCCACCTAACTGAACACCTGCGCATGCACTCCGGGGAGAGACCATACGCGTGCGCAGAATGCGATAAGAGTTACATTACAAAGGGAGATTTGAACAAACACATGTCGATTCATGGTTTGAAAAAACCGTTCCAGTGCGAATTTTGTGACAAAAACTTTCTACGGAATAGCTCCCTAATTGCTCATTTAAAACAGCATTCTAGCAAAAATTTACAAGTTTCCCCCTCAGAGCAAGAATCTCAACCAGAAGAAAAACGTTTTTCCTGCAATGTCTGTAACAAAACTTTCAAACTAAAATATCAATTGCATAACCATTTACTCCACCACACGGGAGAAAAACCTTTTTCCTGCTCGGATTGCGATCGCCAATTCGCTCACAAAAAACTACTGCAAATGCACTTAAAAATCCACACTGGTCAAAAATCGTTCCCTTGCCCAATTTGCGAGAAAGGGTTCTATTACAAAAACCAATTGCAAACTCACCTGCGGTGCCATACGGGAGAAAAACCGTTCGTTTGCACAGTTTGCGGGCAAGGTTTTACGCGCAGAGGCGCGTTTAACTTGCACGTAAAAATCCATACCGGAGATAGACCGTTCTCATGTGATTTGTGCGAAAAGAAATTTCTGAGAAACTCACATTTGAAGGACCACATGAGGAGCCATACTGGAGAGAAACCGTACAAATGCACGATCTGTTATAAGGGGTTCTCTCTGAAATGCGGACTAAAGGCGCATTTGAAGGTGCACGCTGACGATAAACCTTATTGTCGCAAAACTGGGGAACAATGTGCGGATAAGACGGATTATGAGGACCATCTAAATGATCATGGTGGTGATCGTTATATTCTGTTAGAGGATTTACAAGAGGAAAAATGTGAAGTgaaaatgtatgaaataaattga
Protein Sequence: MASWNKAYIKIEIEENSILEETFKTEEYSDVKPYLDCNPNNINCIICEEIFEFELQLQRHVERYHGNHPLRFEAQHIHHQFKVEDETKDIFLCKNASDLVLSAKSSEPEKKTNSPNNPPNEPINTSLPQPSNEVLNVHVTELLNVPETEPLNTPLSQPLKKLSDQLKQSKKQNSKTKRLTCEICGHTCARACHLRQHLKVHTREKPFSCTICGKAFARSDTLKSHENIHKGVKPFSCDVCNKNFVWKSDLTVHLRTHTGERPYSCSVCGQKYIKSGHLTEHLRMHSGERPYACAECDKSYITKGDLNKHMSIHGLKKPFQCEFCDKNFLRNSSLIAHLKQHSSKNLQVSPSEQESQPEEKRFSCNVCNKTFKLKYQLHNHLLHHTGEKPFSCSDCDRQFAHKKLLQMHLKIHTGQKSFPCPICEKGFYYKNQLQTHLRCHTGEKPFVCTVCGQGFTRRGAFNLHVKIHTGDRPFSCDLCEKKFLRNSHLKDHMRSHTGEKPYKCTICYKGFSLKCGLKAHLKVHADDKPYCRKTGEQCADKTDYEDHLNDHGGDRYILLEDLQEEKCEVKMYEIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -