Qclu009147.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010002594.1:2-2617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.4e-05 0.0045 18.2 0.9 1 21 455 475 455 476 0.95 2 15 5e-05 0.0041 18.4 1.6 1 23 483 505 483 505 0.97 3 15 2.5e-05 0.002 19.3 1.9 1 22 511 532 511 532 0.96 4 15 0.00051 0.043 15.2 2.1 1 23 539 562 539 562 0.97 5 15 0.0019 0.16 13.4 2.2 1 23 568 590 568 590 0.97 6 15 8.5e-06 0.0007 20.8 0.9 1 23 596 618 596 618 0.98 7 15 0.0047 0.39 12.1 6.5 1 23 624 646 624 646 0.98 8 15 4.8e-06 0.0004 21.5 0.1 1 23 652 674 652 674 0.98 9 15 0.0051 0.42 12.0 4.9 1 23 680 702 680 702 0.98 10 15 5.7e-05 0.0047 18.2 0.4 1 23 708 730 708 730 0.97 11 15 0.00011 0.0094 17.2 2.3 1 23 736 758 736 758 0.97 12 15 0.0005 0.041 15.2 1.1 1 23 764 786 764 786 0.97 13 15 4.5e-05 0.0037 18.5 1.5 3 23 794 814 792 814 0.98 14 15 0.0001 0.0085 17.4 3.6 1 23 820 843 820 843 0.97 15 15 0.00016 0.013 16.8 2.4 1 23 848 870 848 870 0.98
Sequence Information
- Coding Sequence
- AAAGTTGAAGGTTTGGAGGGAATGTATTTTGGGGAAGAAGATTCTAAAGAAAGTGACTTAGAAGGCAAAAGTTTAGAGTACAACAATTtagattacaaaaatttagagTACAACGAtttagattataataatttagattacaACAATTTAGATTACAACAACTTAGACGACAAGAATTTAGATGAAAGAAATATAGGAGATGAAAGTTTTAAAGAAGAAGCTTTAGATCAAAACGGTTTTAAAGCTTTAGTAtacgaaattataaaaactgaaACTCTAGAAGATGAGGCTCAAGAAAGTGAAGCTTTAGAAGGTGTTGTTTTAAACGCTGAAACTCTGAAAACTGAAACTCCAGATGCTGAAACATCAGATGCTGAAAGTTTAAAATCTGAAACTTTAGAATCTGAAACTTTAGAAGCTGAATCTTCAGAAGCTTTAGAGGCTAAAGCACCAACAGCTAAAACTTCAAAGGCTAAAGCATTAAAAGCCAAAACTTCACAAGCTAAAGCACTAAAAGCCAAAACTTCAAAAGCTAAAGCACTAAAAGACAAAACTTCAAAAGCTAAAGCATTAAAAGCCAAAACCTCAAAAGCTAAAACACTAAAAGacaaaactttaaaagctAAAGCAGTAAAAGTCAAAACTTCAAAAGCTAAAGCGCTTAAAGCCAAAACTACAAAAGCTAAACTACCAAAAGTAGAACCGCTAAAAGTTGAAGCACTACAAGTTGAAGCTTTAGAAAGCAAAGCTCTAGAAACCAAAGCTCTAGCAAACAAAGCTCTGAAAATCAAAACCCTAGACACCAAAAGTCTAAAAACCAAAACCGTAGAcaccaaatatctaaaaacCAAAACCCTAGACACCGAAAGTctaaaaaccaaaattctAGATATTAAAAGTCTAGAAATCAAAATTCTCGATACCGAAAGTCTAGAAACCGAAATTCTAGAAACCAAAAGTCTACAAACCAAAACTCTACAAACCAAGACTCTAGGAACCAAAACTACTCTAGACTTCAAAACTACTCTAGAAACCAAAAATGCAGATATCAAAACTCTAGAAACCAAAACTACTCTAGAAACCAAATGTCTAGAAACCAAAGTTCTAGAAACCAAAACTACTCTAGAAACCAAATGTCTAGAAACCAAAGTTCTAAAAACCAAAACTACTCTAGAAACCAAATGTCTAGAAACCAAAGTTCTAGAAACCAAAACTACTCTAGAAACCAAATGTCTAGAAACCAAAGCCCAAGAATCCAAAGCCCAAGAACCCAAAGCCCAAGAACCCAAAGCCCAAGAACCCAAAGCCCAAGAACCCAAAACCCCAAAACCCGAACCATCCCACAAGTCCCCAGAAAAAAGGTTCTTCTGCAAAGTCTGCAACAAGGGCTTCACGAGGAACTTCACCCTCAAGCTCCACATGATGGCCAATCGAGGAGAGAAACCCCACAAATGCTCCCTTTGCGACAAGAGATTCGTCCAAAAGGGAGGATTGGACAAGCATTTGATGCTTCACAGAGGAGACCGACCATTCTCTTGTCTTCACTGCGAGAAGAAGTTCGTGGACAAGAGTTCTCTTCAGAACCATCTGAAGACCATCGCCAACGACCGTCCCTTCAGTTGCTCCATCTGCGAGAAGAAGTACTTCTCCAAGAGGGATTTGGTGAAGCATGTGCAGAAGACGCACGCCGGGGTTAAACCATTCTTTTGCTACCATTGCGAGAAGAATTTTGGGGAGAAGGGTTCTTTGGTGGAGCACCTCAAAACGCATACGGGGGTGAAACCGCACGAGTGCGCCACTTGTGGGAAGAGATTCGCGGCCAAGGGCAACCTCAAGCAGCACTTGATGACCCATTCTGGGGTGAAGCCCCACAAGTGCCACCTTTGCACCATGACCTTCTCTTTGGGGACCAAGTTGAGGAGGCACTTAAGAACCCATTCTCTGGTGAAGCCTTACCCCTGCGGGGTATGCAACCAGACCTTCGCAGATCCTTACTACTTGAAGCAGCACGTTAGGATCCATTCCACCGAGAGACCCTTCACCTGCGACTTTTGCCAAAAGAGCTTCCACGTGCGCAACCGGCTTAAAAACCATCTTTTGACCCACACAAATAAAGACCGGTTTATATGCAAGATTTGCTCGAAGGTCTTCGTCACCAAGAAGGGTTTGGAAGGTCATGGGAAGACCCACGCTGGAATCAAAGCCTTTAGCTGCCATCTTTGCAACAGAAGGTTCAGCGAGAAGGCTTCGGTGAAGAGGCACATGGTGGTCCATACTGGGGAGAAAAACTTCACTTGTGGTCTTTGTGGGAGGAAATTTGCTTTGAAGCATTCATTGGTGAGTCACCTAGACTCTCACAAGGCCGAGAAGAACTTCGGATGTGACCTTTGTGGAAAGATGTTCAGACAAAAATCTGGGTTAAGGTTCCACCAGAGGACCCATTCCAAAGAGCAACCTTACCAATGCTCCATTTGCAACAGGAAGTTTTCTCTTCAGTGCAGCATGAAGAGGCACATCCGGCTTGTCCACAACAAAGAACGGTTCTCCTGCGGATTATGCGGAAAGGAATTCGGGTTAAAGCATTACTTAAAGAAACACCTAAGTACTCATGTTTAG
- Protein Sequence
- KVEGLEGMYFGEEDSKESDLEGKSLEYNNLDYKNLEYNDLDYNNLDYNNLDYNNLDDKNLDERNIGDESFKEEALDQNGFKALVYEIIKTETLEDEAQESEALEGVVLNAETLKTETPDAETSDAESLKSETLESETLEAESSEALEAKAPTAKTSKAKALKAKTSQAKALKAKTSKAKALKDKTSKAKALKAKTSKAKTLKDKTLKAKAVKVKTSKAKALKAKTTKAKLPKVEPLKVEALQVEALESKALETKALANKALKIKTLDTKSLKTKTVDTKYLKTKTLDTESLKTKILDIKSLEIKILDTESLETEILETKSLQTKTLQTKTLGTKTTLDFKTTLETKNADIKTLETKTTLETKCLETKVLETKTTLETKCLETKVLKTKTTLETKCLETKVLETKTTLETKCLETKAQESKAQEPKAQEPKAQEPKAQEPKTPKPEPSHKSPEKRFFCKVCNKGFTRNFTLKLHMMANRGEKPHKCSLCDKRFVQKGGLDKHLMLHRGDRPFSCLHCEKKFVDKSSLQNHLKTIANDRPFSCSICEKKYFSKRDLVKHVQKTHAGVKPFFCYHCEKNFGEKGSLVEHLKTHTGVKPHECATCGKRFAAKGNLKQHLMTHSGVKPHKCHLCTMTFSLGTKLRRHLRTHSLVKPYPCGVCNQTFADPYYLKQHVRIHSTERPFTCDFCQKSFHVRNRLKNHLLTHTNKDRFICKICSKVFVTKKGLEGHGKTHAGIKAFSCHLCNRRFSEKASVKRHMVVHTGEKNFTCGLCGRKFALKHSLVSHLDSHKAEKNFGCDLCGKMFRQKSGLRFHQRTHSKEQPYQCSICNRKFSLQCSMKRHIRLVHNKERFSCGLCGKEFGLKHYLKKHLSTHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -