Basic Information

Insect: Quadriops clusia
Gene Symbol: -
Assembly: GCA_033557875.1
Location: JAWQRP010008075.1:1645-3084[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00032 0.026 15.8 0.1 1 23 71 93 71 93 0.97

2 14 1.2e-06 0.0001 23.4 0.9 1 23 99 121 99 121 0.99

3 14 1.5e-06 0.00012 23.2 0.7 1 23 126 148 126 148 0.98

4 14 0.00077 0.063 14.6 2.4 1 23 154 176 154 176 0.97

5 14 3.6e-06 0.0003 21.9 0.8 1 23 182 204 182 204 0.98

6 14 5.5e-05 0.0046 18.2 2.0 1 23 211 233 211 233 0.98

7 14 1e-05 0.00082 20.6 4.8 2 23 239 260 238 261 0.94

8 14 6.7e-05 0.0055 18.0 0.9 2 23 281 302 280 302 0.96

9 14 0.011 0.93 11.0 0.5 3 23 310 330 308 330 0.97

10 14 2.9e-05 0.0024 19.1 0.2 1 23 336 358 336 358 0.98

11 14 0.0032 0.27 12.6 6.0 1 23 367 389 367 389 0.97

12 14 4.3e-07 3.6e-05 24.8 1.6 1 23 394 416 394 416 0.98

13 14 3.9e-05 0.0032 18.7 2.0 1 23 422 444 422 444 0.97

14 14 0.0022 0.18 13.2 5.3 1 23 450 472 450 472 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00032	0.026	15.8	0.1	1	23	71	93	71	93	0.97
2	14	1.2e-06	0.0001	23.4	0.9	1	23	99	121	99	121	0.99
3	14	1.5e-06	0.00012	23.2	0.7	1	23	126	148	126	148	0.98
4	14	0.00077	0.063	14.6	2.4	1	23	154	176	154	176	0.97
5	14	3.6e-06	0.0003	21.9	0.8	1	23	182	204	182	204	0.98
6	14	5.5e-05	0.0046	18.2	2.0	1	23	211	233	211	233	0.98
7	14	1e-05	0.00082	20.6	4.8	2	23	239	260	238	261	0.94
8	14	6.7e-05	0.0055	18.0	0.9	2	23	281	302	280	302	0.96
9	14	0.011	0.93	11.0	0.5	3	23	310	330	308	330	0.97
10	14	2.9e-05	0.0024	19.1	0.2	1	23	336	358	336	358	0.98
11	14	0.0032	0.27	12.6	6.0	1	23	367	389	367	389	0.97
12	14	4.3e-07	3.6e-05	24.8	1.6	1	23	394	416	394	416	0.98
13	14	3.9e-05	0.0032	18.7	2.0	1	23	422	444	422	444	0.97
14	14	0.0022	0.18	13.2	5.3	1	23	450	472	450	472	0.98

Sequence Information

Coding Sequence: ATGGTTTCTACACTAGAAAGTGACATTAAACTGGAAATTGTGGAGGAATCTCATAACGAAAACATTTCGGCACAATTTATTACGCTGGTAAAAGAAATACTCCCCGGAATTGAGCTAGAAAAACCTAATCAAAATGACTTAATGGGAACACTTGAACAGTCTTCCAGTTCCGGTAGCAATCATCAAACTCTTAGTAGCCAAGAGAATCGATATGACTGTCCTATTTGTAACGCatcatttaaattgaaatctgAGATAGATAGTCACATGAAAGGACATACTGACAAGAAACCGTACCGTTGCGAAGTTTGCAAGAAGGAGTTTATGACCAACCCTAATTTGCAACGACATTTAAAAATCCATTTGGGTAGTACCTTCTCGTGTCCAGTTTgcgacaaaaaattaaaacgtttgGATAATTTGCAGTTGCACATAAAGAGACATAGTAAAGATAAAAACTTTTGCTGTACCATTTGTGATAAGCGCTTCTTTTCTAAGCAGGAGGTCGCAAGCCACTTAATATCGCACACTCGCGAAAAGGCGTTTCCCTGCACCATTTGCGACAGAAAGTACGCACGTCGTGGGGACTTGTTCACACATATGAAACAACATCAATCTGACGCTGAGGTCTTTCATTGCGCGACTTGTGACAAGAACTTTTCGTCAAATCCAGCCCTGCGGCTGCATTTAAAGCGCCATTCCGGTTTTGAAGTGTCGTGCTCAATGTGCGACAAAAAATTTGCTTATAAACATAACTTAAAGGAACATTTAAGAAGCCATCATGTCGACGGTCACAAGGAGCCACAAGAACAATCTAAAACCCATTCGGACGATGTGCTTCCCTGTCCACATTGTGATAAAAAACTAGCTAGTTTTGACAGTCTTCGAAAGCATTTAATAAGACATGCTGAAGTGAAAAGGTTTGGTTGCACCGTTTGTAATATGCGCTTCTTTACTGGGCAAGAGTTGAGAAGTCACTTAATTTCGCACACGGGCGAAAAGCGGTTTTCTTGTACCATTTGCGGCAAAAAAATCGCTCGAGACAGAGACTTAATAGCACATATGAAAAGACATGACCTAGAAAACCAAGAGAAGCAATTTCACTGCACAACTTGTGATAGGAAATATAAAACGATTCATGGGttggaaaaacatttaaagaatCATGTTGGTAATCAATTTTCATGCTTAGTTTGTGGCAAAACATTTGTTACTCAGCAATACTTGCGGAATCATCTAAGGAGACATGCTGGAGAGAAAAAACATAGCTGTTCTGTTTGCAACAAGCGCTTTCTCACTTGGGATGagttaaagaaacatttgATAACACATACTGGTGAACGACGATTTCCTTGCACTATTTGTGACCTAAAGTTTTTACGATATCATCACTTAAAGagacatttattaaaacacaacCCAGATGACCAGAAGAAATGA
Protein Sequence: MVSTLESDIKLEIVEESHNENISAQFITLVKEILPGIELEKPNQNDLMGTLEQSSSSGSNHQTLSSQENRYDCPICNASFKLKSEIDSHMKGHTDKKPYRCEVCKKEFMTNPNLQRHLKIHLGSTFSCPVCDKKLKRLDNLQLHIKRHSKDKNFCCTICDKRFFSKQEVASHLISHTREKAFPCTICDRKYARRGDLFTHMKQHQSDAEVFHCATCDKNFSSNPALRLHLKRHSGFEVSCSMCDKKFAYKHNLKEHLRSHHVDGHKEPQEQSKTHSDDVLPCPHCDKKLASFDSLRKHLIRHAEVKRFGCTVCNMRFFTGQELRSHLISHTGEKRFSCTICGKKIARDRDLIAHMKRHDLENQEKQFHCTTCDRKYKTIHGLEKHLKNHVGNQFSCLVCGKTFVTQQYLRNHLRRHAGEKKHSCSVCNKRFLTWDELKKHLITHTGERRFPCTICDLKFLRYHHLKRHLLKHNPDDQKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -