Basic Information

Insect: Quadriops clusia
Gene Symbol: -
Assembly: GCA_033557875.1
Location: JAWQRP010004662.1:8960-10680[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.6e-06 0.00022 22.4 3.8 1 23 164 186 164 186 0.97

2 12 1.1e-06 8.8e-05 23.6 0.7 1 23 192 214 192 214 0.98

3 12 7.8e-06 0.00065 20.9 3.3 1 23 255 277 255 277 0.98

4 12 4.8e-06 0.0004 21.6 2.5 2 23 292 313 291 313 0.96

5 12 2.1e-05 0.0018 19.5 0.4 1 23 319 341 319 341 0.97

6 12 5.5e-07 4.5e-05 24.5 1.7 1 23 347 369 347 369 0.98

7 12 4e-05 0.0033 18.6 0.4 1 23 375 397 375 397 0.94

8 12 0.00025 0.021 16.1 0.2 3 23 405 425 403 425 0.96

9 12 3e-06 0.00025 22.2 3.0 1 23 431 453 431 453 0.98

10 12 0.0001 0.0084 17.4 0.7 1 23 459 481 459 481 0.99

11 12 2.8e-06 0.00023 22.3 1.1 1 23 487 509 487 509 0.98

12 12 0.00019 0.016 16.5 2.7 1 23 515 537 515 537 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.6e-06	0.00022	22.4	3.8	1	23	164	186	164	186	0.97
2	12	1.1e-06	8.8e-05	23.6	0.7	1	23	192	214	192	214	0.98
3	12	7.8e-06	0.00065	20.9	3.3	1	23	255	277	255	277	0.98
4	12	4.8e-06	0.0004	21.6	2.5	2	23	292	313	291	313	0.96
5	12	2.1e-05	0.0018	19.5	0.4	1	23	319	341	319	341	0.97
6	12	5.5e-07	4.5e-05	24.5	1.7	1	23	347	369	347	369	0.98
7	12	4e-05	0.0033	18.6	0.4	1	23	375	397	375	397	0.94
8	12	0.00025	0.021	16.1	0.2	3	23	405	425	403	425	0.96
9	12	3e-06	0.00025	22.2	3.0	1	23	431	453	431	453	0.98
10	12	0.0001	0.0084	17.4	0.7	1	23	459	481	459	481	0.99
11	12	2.8e-06	0.00023	22.3	1.1	1	23	487	509	487	509	0.98
12	12	0.00019	0.016	16.5	2.7	1	23	515	537	515	537	0.96

Sequence Information

Coding Sequence: ATGGAAGAGCCAGCCTTGCCGAGAGTATGCCGCGCGTGCCTAACAGAAGACGGCGAGATGCAGTCCGTTTTCGTCTCCGATGAGAAAACGGGCACTACCATACATCTCGCCGAAATGATGATGGCATACGCCTCTGTGcagATAACGCTCGGCGACGGTCTCCCGGAGCAGATTTGCCTCCCCTGCGCCGCCAAAGTCAGTAATACCTACATGTTTAAGCGCCAGTGCGAGGAAAGCGACACGCTATTGCGCCAGAGGTTTGGGGTGTCTCCATTGCAGAAGGAGCAGTTCATCAAGGAGGAGGCCAGCGCGCTGCTCCAGAACGTGGAGATGGCCTCAGATACCatcaatattgttattaaaccAGAATTTGACTTGGAAGAAGAGCAGAGTTTCTTTGATGATTTGAATAATGACACTGAGGATTTAGTGGGAGATGATCAAGGTAGTGATGATTCTGATTATGATCCAAAGAATTCGAGTAAAGTGCATAAGTGTGAGGTATGTAAGAAAGTTTTCAACCGTGCTAGCCACCTGAATCGTCACAAGGCGGTGCATTCGCAATTAAAACCGTATACCTGTGACATTTGTAACCGCGGGTTCACcagaaatgatttattaatgagACATAGAGTGACACATACGGAATCCATGAATAATATTGCTCAGAAGTTGAACGATGctattgaagaaattaaagatGAATCCTGCGATGAAAAACTTGATGAAAGCATTGAATCTGGAGATGAGAGTAAAGATAAACACAGCTGTACAATTTGCCAGAAAGAGTTTGATAAAAAAGAGAGTTTATCTTCTCACATGAGAACTCACATTCAAGATAAAAGTAATAGtaatgataaagataaaatgctgaTTTGTCATGTGTGCTCTAAAATATTCGTCAAACCTAGTCACCTAACACGCCATTTAAAGATACATGCTGCTGTTAAAGCCCACGTTTGCAGCCTCTGCAATAAAGGCTTTGCTCGTGGGGAACAACTGATAAATCACATGAACGTCCACTCCGGGATTAAACCCCACGTTTGCTCCATCTGCTCCAAAGGTTTCAATCAAATCAGCAATTTGAAAGACCACATGCGAACACACAACGGCGAAAAGCCTTTCCTTTGTGCCACCTGCGGAAAAGGTTTCAATCAATTGGGGAATCTCCGACAACACACGATCCGCCACTCGGGAATCAAAGCACATCTGTGCAGCATTTGTGGGAATGGTTTCGCTTCCAAAGGTGAACTGGGAGCCCACTTGCGAAAACACACTGGAGCTCGACCGTTTGTCTGCCAGATCTGTAACCATGGTTTTACTACTTCATCATCGCTAACAAAACACAAACGCATCCACTCCGGTGAAAAACCATATGAGTGTGAGGTCTGCAAAATGAGATTTTCCAGAAGCGGGATACTTGCGAGGCACAAGCGCACTCACACTGGTGAAAAGCCATATGTCTGTAAGTTCTGTACAAAAGCATTTTCACAGTCAAATGATTTGAGCTCGCATCTTAGAATTCACACCGGTGAGAAGCCGTTTATATGTGATTGTTGTGGACAGGCGTTTAGACAGAGCTCTGCATTGAAGACGCataaaaaaactcacataGATAGATTAGCAATGATTCAAACTAGTTTATTGAATACCATTCAATGA
Protein Sequence: MEEPALPRVCRACLTEDGEMQSVFVSDEKTGTTIHLAEMMMAYASVQITLGDGLPEQICLPCAAKVSNTYMFKRQCEESDTLLRQRFGVSPLQKEQFIKEEASALLQNVEMASDTINIVIKPEFDLEEEQSFFDDLNNDTEDLVGDDQGSDDSDYDPKNSSKVHKCEVCKKVFNRASHLNRHKAVHSQLKPYTCDICNRGFTRNDLLMRHRVTHTESMNNIAQKLNDAIEEIKDESCDEKLDESIESGDESKDKHSCTICQKEFDKKESLSSHMRTHIQDKSNSNDKDKMLICHVCSKIFVKPSHLTRHLKIHAAVKAHVCSLCNKGFARGEQLINHMNVHSGIKPHVCSICSKGFNQISNLKDHMRTHNGEKPFLCATCGKGFNQLGNLRQHTIRHSGIKAHLCSICGNGFASKGELGAHLRKHTGARPFVCQICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMRFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLSSHLRIHTGEKPFICDCCGQAFRQSSALKTHKKTHIDRLAMIQTSLLNTIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -