Qclu001474.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Quadriops clusia
Gene Symbol
-
Assembly
GCA_033557875.1
Location
JAWQRP010000235.1:21981-33527[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.29 24 6.5 4.1 2 23 182 203 181 203 0.95
2 16 0.0001 0.0083 17.4 3.4 1 23 208 230 208 230 0.98
3 16 0.00014 0.011 17.0 5.0 1 23 236 258 236 258 0.97
4 16 0.0084 0.69 11.4 0.7 1 21 264 284 264 285 0.93
5 16 7.2e-06 0.00059 21.0 0.7 1 23 292 314 292 314 0.96
6 16 0.00051 0.042 15.2 0.4 1 21 525 545 525 546 0.94
7 16 9.1e-07 7.5e-05 23.8 4.3 1 23 554 576 554 576 0.99
8 16 2.7e-05 0.0022 19.2 5.5 1 23 582 604 582 604 0.98
9 16 1.6e-05 0.0014 19.9 0.8 1 23 610 633 610 633 0.97
10 16 0.012 0.99 10.9 1.1 1 23 645 667 645 667 0.97
11 16 0.0011 0.089 14.2 7.9 1 23 673 695 673 695 0.98
12 16 2.8e-06 0.00023 22.3 0.5 1 23 702 724 702 724 0.96
13 16 1.7e-05 0.0014 19.8 1.3 1 23 730 752 730 752 0.98
14 16 5.3e-07 4.4e-05 24.6 0.9 3 23 760 780 758 780 0.96
15 16 7.8e-06 0.00065 20.9 0.1 1 23 786 808 786 808 0.99
16 16 0.46 38 5.9 1.2 1 23 813 836 813 836 0.95

Sequence Information

Coding Sequence
ATGAAGACCGTCAGCTTCGAGGAGATGGAAGGGTTAGAGTACAATTTTTCCAGAATTTGCAGGACTTGTAAGGGCGAAGTTGGCAACATGAGGTCTCTCTTCCAAGAGTGTGAAAATTCGGGACAAAAGACCCGAGTTGACGAGATGCTAATGGCTTGCGCCTCTGTCCAGATCGACAGCGAAGACGCCCTCCCAAAACTAATATGCGAACTCTGCATCAACAAGCTCGAGACCGCCTACTCCTTCAAAAAGCAATGCGAAACCTCCGAATCGCACCTCCGGGACCTCGTGAGGTCCATAAAGGGCCCCTCCATCAAAGAAGAGCTCCAAATCTCCCAAGCCGAGCAGGTCATCCTCAACGACATCTTTAACCTGAGCAACGCTCAAACCCTCGAAATCGTCGCCTCCCAGCAAGAACCCATTAAGCCTATCAAAGACACCTACGTCCTCCCGGACAGCAACTTCGTCCCGGAAGTCGTCATGCAAGACCAAACCACCAATAGCGATTACATAGAATTTGTCGGAAACGGACAGCTATTGCTGCATTGCCGAGTTTGCCTCAAAGTTTTCACTACCCTCGATGGGCTCAAATGCCACAAGAGGGTCCACACTGGCGACTTGTTTAAGTGCAAGACCTGCGATAAGGAGTACATCCGATTGAACCATTTGCAAAGACACGAATTGTCTCACGGAAAACGGAAATTGCACGTCTGCAAGATTTGCAATAAGACGTTGAATCGGTTCGAGCATCTCAAGCGGCACCTTATAACGCACTTGAAGGAGAAACCGTTCGCTTGCATGAATTGCAACCGAGGATTCAATCGGATGGAGCACCTCCTAAATCACGTGAAGAGGTGCAAAGGTGATAGAGTGCACATTTGTGATATTTGCAATAAGGCTTTCAATCGGGAGGATAGCTTGGAGGTGCATAGACGATTGCACGAGAACAAAATGCCCGTCTTGCCTACGCTGGAAAATTTAGATAACATAGACGAGCATTACTACGAGATCGATTGCGACGATGCGAGTTTTCCGCCTTATCCTGATTCGGAGGATGACGAGAACGACGAGGAAGATTTTCAAGGACCATTCGGGGATCAAGAAGAGAATAGCAATGAAACGATGAGGAATACGGAAGATGAAGCGCAAGATCACGATGGTGAAGACGAGGAAGATTTGAGGAAGGACGGTGAAATTGTGAAGGATGAATTTACGCAAGAACGAAATATTGAAGAAGAGGAGGTGCAAGACGATATAAAAGAAGATGAATTTGTAGTCATGGAGAAAATGGAAGTTCGGAGTGTGGACGCGACGAGTGAAATTTATGAAGAGGATAGGTTGGATAGTTATGTGGAGGAAGGGTTTCATGGGGCCGATTCGGATAGCGGACAATCGGAATATTTCCCTACGAAAAGTGAGGTAAAAGCAAAAAGGGGTAGAGGTCGCCCAAGGAAAAACCCGACATCTTCCACAAAACCATCAAAACCTTCTGCAAAACGAGGAAGACCTTCAAAagtgaaaaaagaaaaactagtGGTGGAAAGCCGAGTTAACGAAGATGCGATAGGAGAATTCACATGTCCGATGTGCAGCAAAGTGTTCAAGAAAGGAAGCTTATTGGATAAGCACCAGGAGAAATGTACCGAAGAGCTTAAGACCTACAAGTGCGAGGTGTGTACTAAGGAATTTTCCCGATCAAATCATCTTAAAAGGCACATGTCTTCACATTCGGAAACCAAACCTTTCGTTTGCGAGAAATGTGCCAAGTGCTTCAATAGAAGAGACCATCTCATGCAACACATGAAACTGCATACACGTTTAAAGGAGTTTGAGTGCGACGTTTGCCAAAGGCCGTTTGCGAGAGCCGACCATTTAGCGAAACACAAATTAACCAAGCATAACGTTGGAGAGAGAGTTTTAGGCGAAAAGAAGTTCCAGTGTAACATTTGCATGAAGTCTTTCACCACGGAAAAGTACAGAGATGTCCATATAAAGGGTCATACTGGGGAGAAGAAGTATCAATGTAAGACTTGCGAGAAGTGCTTTTTGTCCAAGTCGCATCTTACTGAACATATGAAGTTCCATAATGACAATTCGAAGAAGTTTTTGTGCTCGGAATGTGGTCAAAGGTTTATTCGGAATGATTATCTGGTGATTCATATGAGGAGGCATCGGGGAGAGAAACCTTTTAAGTGCAAATTTTGTGGTAAAGGTTTCCCACGTACGACGGATCTCACCGTCCATGAGAGATATCATACAGGAGAGAAAACTCATTTGTGTACGATTTGTGGGCGAGGATTTGGTCGGGCGTACAATTTGACGGTGCACATGAGGACTCATACCGGAGAAAAGCCATATCAATGTACTTATTGTGATGCAGCTTTTGCACAGGGAAATGATTTAAAAGCACATATTCGTCGCCATACTGGAGAGAGGTTCCATTGTGATTTGTGTCCGGAGACGTTTTTGATGGGATATCTTTTGACCCAGCACAAACGATCGATACATGGTCTAAACATAGTAAGCAACATTAGGAGACTCCAACCGATTTCGAAAATGCAACAAAATCCCGACGATCCGCCTCCACTTCTAGTACCTTTGCCGCAACCAGTCGTACCTTCGAGTTTACTGAATAGTCAAATTCAGGCTCAACTTTCAGCGGTTTCAATGCAACAAATTACTCcggattaa
Protein Sequence
MKTVSFEEMEGLEYNFSRICRTCKGEVGNMRSLFQECENSGQKTRVDEMLMACASVQIDSEDALPKLICELCINKLETAYSFKKQCETSESHLRDLVRSIKGPSIKEELQISQAEQVILNDIFNLSNAQTLEIVASQQEPIKPIKDTYVLPDSNFVPEVVMQDQTTNSDYIEFVGNGQLLLHCRVCLKVFTTLDGLKCHKRVHTGDLFKCKTCDKEYIRLNHLQRHELSHGKRKLHVCKICNKTLNRFEHLKRHLITHLKEKPFACMNCNRGFNRMEHLLNHVKRCKGDRVHICDICNKAFNREDSLEVHRRLHENKMPVLPTLENLDNIDEHYYEIDCDDASFPPYPDSEDDENDEEDFQGPFGDQEENSNETMRNTEDEAQDHDGEDEEDLRKDGEIVKDEFTQERNIEEEEVQDDIKEDEFVVMEKMEVRSVDATSEIYEEDRLDSYVEEGFHGADSDSGQSEYFPTKSEVKAKRGRGRPRKNPTSSTKPSKPSAKRGRPSKVKKEKLVVESRVNEDAIGEFTCPMCSKVFKKGSLLDKHQEKCTEELKTYKCEVCTKEFSRSNHLKRHMSSHSETKPFVCEKCAKCFNRRDHLMQHMKLHTRLKEFECDVCQRPFARADHLAKHKLTKHNVGERVLGEKKFQCNICMKSFTTEKYRDVHIKGHTGEKKYQCKTCEKCFLSKSHLTEHMKFHNDNSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFHCDLCPETFLMGYLLTQHKRSIHGLNIVSNIRRLQPISKMQQNPDDPPPLLVPLPQPVVPSSLLNSQIQAQLSAVSMQQITPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-