Qclu014933.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Quadriops clusia
Gene Symbol
-
Assembly
GCA_033557875.1
Location
JAWQRP010005382.1:1248-9157[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 3.7e-05 0.003 18.8 1.8 1 23 102 124 102 124 0.98
2 21 0.24 20 6.8 2.0 1 23 144 166 144 166 0.95
3 21 0.19 16 7.1 0.7 2 20 171 189 170 192 0.75
4 21 0.63 52 5.5 1.6 1 23 197 220 197 220 0.95
5 21 0.1 8.3 7.9 1.9 1 19 226 244 226 248 0.76
6 21 0.0011 0.092 14.1 2.7 1 23 255 278 255 278 0.96
7 21 2e-05 0.0017 19.6 0.3 1 23 289 312 289 312 0.98
8 21 8.5e-05 0.007 17.6 3.8 3 23 323 343 321 343 0.96
9 21 1.3e-05 0.0011 20.2 1.9 1 23 349 371 349 371 0.97
10 21 1.3e-07 1.1e-05 26.5 3.3 1 23 377 399 377 399 0.99
11 21 1.9e-05 0.0016 19.7 2.5 1 23 442 464 442 464 0.98
12 21 0.011 0.92 11.0 2.5 1 23 484 506 484 506 0.96
13 21 0.77 64 5.2 0.4 2 11 511 520 510 521 0.91
14 21 0.25 21 6.7 1.5 1 23 537 560 537 560 0.97
15 21 0.28 23 6.5 1.6 1 11 566 576 566 580 0.90
16 21 0.00011 0.0088 17.3 2.9 1 23 595 618 595 618 0.97
17 21 0.00015 0.013 16.8 1.4 1 23 629 651 629 651 0.98
18 21 4.2e-06 0.00035 21.7 0.3 1 23 662 684 662 684 0.96
19 21 0.00013 0.011 17.0 4.6 1 23 690 712 690 712 0.98
20 21 2.9e-06 0.00024 22.3 3.2 1 23 718 740 718 740 0.99
21 21 0.0054 0.45 12.0 0.1 1 21 746 766 746 767 0.96

Sequence Information

Coding Sequence
ATGGTAACATTCCATAATACACCTGCACAGGGATTGTCGAAGATATTATCCAATAACATACCTTTCTTGCTAGACTATCATTCAAAGTATTCCATAAAGAACGCTCTAGAACTTACACACCTACTAAATACAATTACACCAAAGCCAGAACAGATAATGGTATCCTTTGATATCAAGAACCTTTATACTCACGTCCCAATCATAGAAACGATATTATCGCCCAATTTAGAGGTCGTATCAAAAGAAGAAGTTAATGTAAAACCGCATACTGTTGAAATTGCTACAACTTGTGAGCCGAATTCATACCCCTGCGAAGTATGTGGAACCATTTTTACCAACAAGAAACACTGGGAGACGCACAAGAAGTCGCACAAATTGGTTAAGCCCGTGAGGCACCCAGAATACAGTTTCAACAACAAACGCAAAGTGTACGTTTGCAAGACTTGCAAGATCGAGTGCAAGAAGAAATTGGACATGGAGAACCATTTGGACGAACATAGAGACGAAATCAGTTGTCCTTACTGCTCGAAGGTCTTCAAAGGTCTTGCTAAATGCGCCATCCACACTCTTGAGCACAACAAAGACTTCTATAAGTGTCCGCTTTGCGAATACCAGACGCAAATTCGAGCCAACATGTTACGACATGTCCACAAAACCCACATGAAGCAGCGATGTTTCCTTTGCAAACACTGTGGGAAAGGTTTCAATGATCGTACATTACACGCAGAGCACGAAGACAGTCATTTGGAAGGTACTGCTAAGTTCCAATGTGTTGTCTGCAAGAACGTCTTCAGTCACTCGAGCTATCTGTACAACCACCAAGTACGTAGTCACAGGATAATCATCGAGGGAGTTTTGTCAAAGTTCCAATGCGATGTGTGCTTTAAAGTGCTCGCGACATCTAATAACCTGGAGAGACATATTATGAAACTGCAcgcttccgatagcaaaggaaAGACACATTTGTGTGACACGTGCGGTAAAGGGTTCATCCATCCTCATAGTCTGAGGATTCATTACCGCGTCCACACTGGAGAAAATCCGTTTTGTTGTTCTTACTGCGGAAGGAGCTTCGCCACGAAGACGGGTTTAGTGACGCACGAAAGGATTCACACCGGGGATAAACCTTACAGCTGTGAATATTGTGGGAAATGTTTCACGCAAAAGCCTCCATTGAAGACTCACATGAGAACACATACAGGAGAAAAACCTTACGTGTGTCGCTTATTACTACCCAAAATAGAAGTGGTATCAGAAGAGGTGCAAATACAACCGGTTCCCATTCAATTTCTATTATTGTACCCTCCTTGTAAGCCCAATACATACCCCTGCGAAGTATGTGGGACCATTTTTACCAATAAGAAGCACTGGAGGTCACACAAGAAGACGCACAAACCGTTTTATACCGAGAGGCCACCCGAGTACAGTTTTAACAAAGATAAGAAAGTCTACGTCTGCAACACTTGCAAGACCGAGTGCAAGAACAAAGTGGACATGAAGAACCATTTGGACGAGCACCGCGAGGAAATAAGCTGCCCTTACTGCTCGAAGGCCTTCAAAGGTATTGCTAAATGCGCCTTCCACACTCTTGAGCACAACAAAGACTTCTACAGGTGTCCCCTTTGCGAGTACAAAACGCACCTTCGATCCACCATATTAGCACATATCAACAAAACCCATCTGAAGAAGTACAATTTCATTTGCAAACACTGCGGGAAAGGTTTCGACGATGGTAAATTCCACGCAGAGCACGAAGAAAACCATTTGAGCGGCAATGTTAAGTTTCAATGTGTTGTCTGCAAGAGAATCTTCAAACACTCGAGTTATCTGCTTAACCACCAAATACGAAATCACAGGATAATCATCGAGGGGGTATTATCAAAGTTCCAATGCGATATCTGCCTTAAAGTACTCACGACATCAAAGCTTTtggaaaaacataaaaaacggCACTCTTCCGATAGCAATcggaaagaaaagaaatatttgtgtGACATGTGCGGGAAAGGGTTCCCTCAATCTGATAAACTGAAGATCCATTATCGAGTCCATACCGGAGAAAAACCGTTTAGTTGTTTTCACTGTAGCAAGAGCTTCTCCAAGAAGACGTCTTTAGAGATGCACGAAAGAATTCACACGGGAGAAAAACCTTACAGTTGCGAATATTGCGGGAAGAGCTTCAATCAACACACTCCGTTGAAAATTCACAGGAGAACACACACAGGAGAGAAACCTTACGTTTGTCGCTTGTGCGGCAAAGGATCTGCGTCAAAGGGTACCATGAAGTTGCACATGAAGTCCTGTCGTGGAAAGGATTAG
Protein Sequence
MVTFHNTPAQGLSKILSNNIPFLLDYHSKYSIKNALELTHLLNTITPKPEQIMVSFDIKNLYTHVPIIETILSPNLEVVSKEEVNVKPHTVEIATTCEPNSYPCEVCGTIFTNKKHWETHKKSHKLVKPVRHPEYSFNNKRKVYVCKTCKIECKKKLDMENHLDEHRDEISCPYCSKVFKGLAKCAIHTLEHNKDFYKCPLCEYQTQIRANMLRHVHKTHMKQRCFLCKHCGKGFNDRTLHAEHEDSHLEGTAKFQCVVCKNVFSHSSYLYNHQVRSHRIIIEGVLSKFQCDVCFKVLATSNNLERHIMKLHASDSKGKTHLCDTCGKGFIHPHSLRIHYRVHTGENPFCCSYCGRSFATKTGLVTHERIHTGDKPYSCEYCGKCFTQKPPLKTHMRTHTGEKPYVCRLLLPKIEVVSEEVQIQPVPIQFLLLYPPCKPNTYPCEVCGTIFTNKKHWRSHKKTHKPFYTERPPEYSFNKDKKVYVCNTCKTECKNKVDMKNHLDEHREEISCPYCSKAFKGIAKCAFHTLEHNKDFYRCPLCEYKTHLRSTILAHINKTHLKKYNFICKHCGKGFDDGKFHAEHEENHLSGNVKFQCVVCKRIFKHSSYLLNHQIRNHRIIIEGVLSKFQCDICLKVLTTSKLLEKHKKRHSSDSNRKEKKYLCDMCGKGFPQSDKLKIHYRVHTGEKPFSCFHCSKSFSKKTSLEMHERIHTGEKPYSCEYCGKSFNQHTPLKIHRRTHTGEKPYVCRLCGKGSASKGTMKLHMKSCRGKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-