Qclu007655.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010002041.1:9307-12603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.2 17 7.0 0.1 1 23 56 79 56 79 0.89 2 18 0.00016 0.014 16.7 0.9 3 23 175 195 174 195 0.98 3 18 2.8e-05 0.0023 19.1 1.6 1 23 201 223 201 223 0.95 4 18 9.7e-07 8e-05 23.7 2.3 1 23 229 251 229 251 0.98 5 18 0.0027 0.22 12.9 0.8 1 23 257 279 257 279 0.98 6 18 1.4e-05 0.0011 20.1 0.3 1 23 285 307 285 307 0.97 7 18 4.4e-06 0.00037 21.7 3.2 1 23 313 335 313 335 0.99 8 18 0.001 0.084 14.2 0.6 1 23 341 363 341 363 0.95 9 18 1.1e-05 0.00095 20.4 1.7 1 23 369 391 369 391 0.98 10 18 4.7e-07 3.9e-05 24.7 0.9 1 23 397 419 397 419 0.97 11 18 0.11 9.2 7.8 1.0 2 23 681 703 680 703 0.96 12 18 0.00059 0.049 15.0 3.5 1 23 709 731 709 731 0.97 13 18 7.2e-07 5.9e-05 24.1 0.9 1 23 737 759 737 759 0.98 14 18 0.00092 0.076 14.4 2.3 1 23 765 788 765 788 0.97 15 18 0.013 1 10.8 3.1 1 23 796 818 796 818 0.97 16 18 0.042 3.5 9.1 3.0 1 23 824 846 824 846 0.97 17 18 0.024 2 9.9 6.3 1 23 852 875 852 875 0.96 18 18 1.2e-05 0.001 20.2 0.1 3 23 891 911 889 911 0.97
Sequence Information
- Coding Sequence
- ATGGCCGGGGAAGTACAAGGCTTTGCAATGAATACAGAAATTACGCCTGAAGATCAAGAAAATATGGAAGAAATCAAAGAAGAATTAAAAGAGGCcgaagaagaagatgaagtGAATGAGACGATAACCGCGGAATCCGTATCAGAAAAAGATgtaaatttccaattttcctGTTCAATTTGCCAAGAAGCTTTCCAGGATGAAGAAAAGCAGCGTATACACGTCGCGTTAACTCATGAAGCAGACTTAAAACAAGCGGCGTCTTCACTAGTTAATGCCACAGGTATAAATTCCTCATCTTCCAACGACTCTACTCCGCAAATTTGCACTATTAATCCAATTTGCAATATTAATCCAATTTGCAATATTGATCCAATTTGCAATATTGATCCAATTTGCACTATTAATCCAATTTGCAATATTGATCCAATTTGCAATATTGATCCAATTTGCAATATTGATCCAATGTGCACTATTGATCCAATTTGCACTATTGATCAAATTTGCACTACTTAcgaaatttgcaatatttgcaacaaaatttgttcGTCTCTTCAAGCTTTGAACGTTCACCAGCGGATCCACACCGAGGAAAACCGGTTCTTGTGCAGCATTTGCAAGAAAACTTATTCGAAGAGGACTAGCTTGCAGGCGCACTTGCTCACGCATTCAGGCGAATTACCCTTCTCGTGCGCGCTTTGTGAGAAGACGTTCTCGACTAGCAGCCGATTGAAGACGCACATGAGGACGCATACTGGTGAAAAGCGTTACTCTTGCGCCGTTTGCAACAAAGCGTATTTGTACAGCAGTTCTCTGAGGAAGCACGAGAGCACGCATACGGGGGATAAACCGTTCGCCTGCGCTGTTTGTGGGATGTCGTTTTCGACCAATGATAGACTGACGACCCACGCGCGTAcccatacaggtgagaaaccgtacTCTTGCACCGTTTGCAAGAAGTCATACTCGCATAGTGGTACCCTGACGGAGCATTTGAGGACCCACGCTggcgagaaaccgttttcttgcaTAATTTGCAAGAAGTCGTATGCGAAGAGAGGGGGATTAAGGACGCACCTGCGGGTGCATACGGGGGAGAAACCTTATTCGTGCGAGATTTGCATGAAGACATTCAGGCAGAGCGCGCATTTGAACGATCACCTGCGGATACATACCGGGGAGAAGCGGTTCGCTTGCGCTTTTTGCGATAAGTCGTATTCGCAGCAGAGTAATCTGAAGGTTCATTTGCGGTCTCATGCTGAGGAGAAACCTTTTTGCTCAGAGAAATTTCCTGAGATGGATGATAGAGGCGACagttgtttcatttgttttcaaagCAATCATGATTTCCGTGTAGAGATTTTGGGCGGGGAAGACGTGCAAATGCTGCAGTACCTCATTAGTGAATtaACCTGGCTGACAAGTCATCCGATCTCAGTGTGTGTCGAATGCAAAGACGACCTTCAGCAAGCGGTGGCCTTCAAGAGGAAATGTCTGCAATCCGAAGAAGTCCACTTAAAGCGAGAGCGCGGAGTAAAAGTGGAGATGACGAAAGAGAGCTTTCCCGAACAAATAAAGTGCGAAGTTGCCCCCCAACAAATTCAGTTTAAAAGCGAGCCAGATTCCGAGAGCGGACAAACAAATGTGCGAAGTGGACCGTCTACCATCGTACGAGAAATCGAGTTGGACTTACCGAGATTTGATTCGGACTCTTTAAGCTTTTGCGATTCAGGTGAGGATTCGGAAGATGTGATAAGCGATTATACGAGTGACCAATCGTGGAGTAAAGATGAAGAAACGAAGAGGAAACAGAAAAAGAAGGTGAAGCCGAAAAGTGAATTACGGGCGGATGTTGTTCGGAAAACGGAAGAACTTAGGAAAGAAAAACttggaaaacaaaaatttggaaaagaaaaacttgtaaaacaaaaatttggaaaagaacaacttgaaaaagaaaaatcggAGGCGAATCCGACTAAGGGGAACAGAATCGAGTTCGTTAAGAAGTACAGCTACTGGCCGGAGACGCACGAGAAGAAGTGTCGGATATGCAACAATACGTTCACGAGAATCGACATATTACGATTGCATGTGAAACGAGTCCACCCGCTGTCGAACAACTTCACTTGTGACCACTGCGGGGAGAAGTTCCGCAATCGGGAGATCCTCGAGCGGCACATTAGCCACCACACTGGTGAAAAGAACTACGTTTGCGCCACCTGCGGAAAAACCTTCTTCCAGTCCTCGCAGCTGAATACCCACATCCAAAGCCACGAGAACCGACGAACGTACAAATGCGAATTGTGCGAATCTAGCTTTAACACATCCAGCACCTTGCATTCGCACAAGCAGATCGTCCATACTCCTGTAAACAAACGCAAGCACGTTTGCGAGATCTGCGGACAACCTTGCGTCAGCAATAGTCGACTTAAATTTCATATGAAGCGGCACACGGGGACGAAAGACTTCGCCTGTCATTTGTGTAAAGTCAAGTGCTATTCCCTCGGAGAGCTCAACGTTCACGTGAAGCGGCACGCGAACACTCGAGGGTACAAGTGCGACTTGTGCAATTTGGACTACAATCGGAAGCACCATCTCGATCGGCACAAGCAGAACAAACACGGGATAAGTCGAAAAGATTTGGTGAAGAAGCCGAGGAGGATCGCTTGTCCTCATTGCAATGAAGTGTTTGAAACTAAGGACGAACTTGGTGTGCATATGAATATGCATGAAACTGGCGGGGACAACGTACTGATTAGTTGA
- Protein Sequence
- MAGEVQGFAMNTEITPEDQENMEEIKEELKEAEEEDEVNETITAESVSEKDVNFQFSCSICQEAFQDEEKQRIHVALTHEADLKQAASSLVNATGINSSSSNDSTPQICTINPICNINPICNIDPICNIDPICTINPICNIDPICNIDPICNIDPMCTIDPICTIDQICTTYEICNICNKICSSLQALNVHQRIHTEENRFLCSICKKTYSKRTSLQAHLLTHSGELPFSCALCEKTFSTSSRLKTHMRTHTGEKRYSCAVCNKAYLYSSSLRKHESTHTGDKPFACAVCGMSFSTNDRLTTHARTHTGEKPYSCTVCKKSYSHSGTLTEHLRTHAGEKPFSCIICKKSYAKRGGLRTHLRVHTGEKPYSCEICMKTFRQSAHLNDHLRIHTGEKRFACAFCDKSYSQQSNLKVHLRSHAEEKPFCSEKFPEMDDRGDSCFICFQSNHDFRVEILGGEDVQMLQYLISELTWLTSHPISVCVECKDDLQQAVAFKRKCLQSEEVHLKRERGVKVEMTKESFPEQIKCEVAPQQIQFKSEPDSESGQTNVRSGPSTIVREIELDLPRFDSDSLSFCDSGEDSEDVISDYTSDQSWSKDEETKRKQKKKVKPKSELRADVVRKTEELRKEKLGKQKFGKEKLVKQKFGKEQLEKEKSEANPTKGNRIEFVKKYSYWPETHEKKCRICNNTFTRIDILRLHVKRVHPLSNNFTCDHCGEKFRNREILERHISHHTGEKNYVCATCGKTFFQSSQLNTHIQSHENRRTYKCELCESSFNTSSTLHSHKQIVHTPVNKRKHVCEICGQPCVSNSRLKFHMKRHTGTKDFACHLCKVKCYSLGELNVHVKRHANTRGYKCDLCNLDYNRKHHLDRHKQNKHGISRKDLVKKPRRIACPHCNEVFETKDELGVHMNMHETGGDNVLIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -