Qclu015320.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- Gzf1
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010005599.1:3807-10537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.54 44 5.7 2.1 1 23 16 38 16 38 0.91 2 27 9.1 7.6e+02 1.8 0.6 2 11 43 52 42 61 0.91 3 27 0.22 19 6.9 1.6 1 23 69 92 69 92 0.97 4 27 0.42 35 6.0 4.9 1 23 98 120 98 120 0.94 5 27 0.004 0.33 12.4 1.9 1 22 127 148 127 150 0.90 6 27 3.8e-06 0.00031 21.9 1.4 1 23 161 183 161 183 0.97 7 27 0.00083 0.069 14.5 3.2 3 23 194 214 192 214 0.96 8 27 8.2e-07 6.8e-05 24.0 1.5 1 23 220 242 220 242 0.98 9 27 1.2e-06 9.9e-05 23.5 0.2 1 23 248 270 248 270 0.98 10 27 0.24 20 6.8 0.0 1 17 276 292 276 293 0.91 11 27 0.96 80 4.9 1.9 1 23 348 370 348 370 0.89 12 27 0.0064 0.53 11.7 2.7 1 23 429 451 429 451 0.96 13 27 0.00053 0.044 15.1 1.9 1 23 458 481 458 481 0.96 14 27 9.1e-07 7.5e-05 23.8 0.5 1 23 492 514 492 514 0.98 15 27 0.00019 0.016 16.5 1.6 3 23 525 545 523 545 0.96 16 27 0.00025 0.021 16.2 0.7 1 23 551 573 551 573 0.98 17 27 2.1e-06 0.00018 22.7 1.0 1 23 579 601 579 601 0.97 18 27 0.0008 0.066 14.6 0.1 1 20 607 626 607 626 0.97 19 27 6.9 5.7e+02 2.2 1.2 2 23 711 732 710 732 0.89 20 27 0.091 7.5 8.1 2.9 1 23 801 823 801 823 0.95 21 27 0.34 28 6.3 4.8 1 23 882 904 882 904 0.91 22 27 0.00048 0.039 15.3 0.9 1 23 911 934 911 934 0.93 23 27 0.0016 0.13 13.6 4.5 1 23 945 967 945 967 0.98 24 27 0.0014 0.12 13.8 1.1 3 23 978 998 976 998 0.95 25 27 0.00049 0.04 15.2 1.0 1 23 1004 1026 1004 1026 0.98 26 27 2.3e-06 0.00019 22.6 1.2 1 23 1032 1054 1032 1054 0.97 27 27 0.00021 0.017 16.4 0.1 1 20 1060 1079 1060 1079 0.97
Sequence Information
- Coding Sequence
- AGTGTCCGAGAACGACCCTATACTTTTGATAGAATTGAAGGAGAATACACTTGCACTAAGTGTGGCTTCCAATGCGACACTAAGAAAGAAATAGACGACCATTTAGATGATCATGAGGAAGAAGTTAGTTGTCCGCAATGTGCGAAAGTGTTCAAAGGGATTTACAAATGTGCTCTTCATTCCATCGAACACAACAAAGACTTATATAGTTGCCCCAGTTGTGAATACACTAATAATAGTAATCGGTCATTGCTGCACCATGTTAGAATAACTCACTTGAAGAAATATAGGTTTGTTTGTAAACACTGCGGAAAAGGATTAAACGATTACAAGTTTTATAAGGAACATGAACACAATCATGTGGATAATACAGCTAAGTTTCGATGTCTTGTATGTAACAAGAGATTTATGTATTCATCATATTTACGTGGCCATCAAGTTTTTAATCATGTAGTTACTACAGGCTTGGGGAACACGAAACACCAGTGCAAAGTTTGCCAAAAAGTTTGTCCAACGCCTTCTAATCTGGCGAGGCACATGGTCGTTCATGTCAAGGATTCTGAACGAGAAAAGCATTTGTGTGACGTCTGCGGGAAAGGCCTTTGTTCTCAAGAGAAGTTAAAGATTCACTATCGCACGCACACCGGAGAAAAACCCTATTCTTGCTCGTACTGTGAGAAGAGTTTTAGCACGAAGTCGACATTAGTTCAGCACGAAAGAGTACACACTGGAGAAAAGCCGTATGTCTGCAGGATCTGCGGTAGGGGCTTCACTCAACCAAAtccattaaaaaatcacatgaGGATTCACACCGGAGAGCGACCTCATGTTTGCCCTTTGTGTGATAAGGGATATATGTCTAAAGCTGCTTTGAAgTTAAAACCAGAAGAAGAATCAACTAAGTCAGAACCATGTGAACcccccaataaaaaaatactaagaaGGCGGAAAAGGAATCAGACATATGTTAAATCTACGAGCTCTGCTACAGCGAGCTCTCTCCTAGAACGACCATACACTTATGATAGAATTCAAAGAGAATTCACTTGCACTAAGTGCGGCTTCCAATGTGAgactaaaaaagaaataggGGACCATTTAGATGATCACGAGGAAGAAGTTAGTTGCCCTAAGTGTGCTAAACCGTTCAAAGGAATTTACAAATGTGCCCTCCATTCCATCGAACACAACAAAGACTTCTATAGTTGTCCCAGTTGTGAATACACAGGAAATGATAGGTGCATGAGGGAGCATGTTAGAATGTCTCACTTGAAGAAGTTCAGGTATATTTGTAAGCACTGCGGGAAAGGTTTTGGcgattacaaattttataaggAACATGAAAACAACCATGTGGATACATCAGCGAAGTATAAATGTGTTGTATGTAATAAGAGATTTATGTATTCATCTTATTTACGTGGCCATCAACTTTATAATCATGAAGTAACTACAGGCTTGGGGAGTACGAGATATCAGTGCAAAGTTTGCGAGAAAATTTATCAAACAGCTTCTAATCTTAAGAGGCATATGATCGTCCATTTAAAAGATTCCGAACGAAAAAAGCATTTGTGTGATGTGTGCGGGAAGGAACTTTCTTCTCAAGAGAAGTTAAAGCTCCACTATCGCACGCACACAGGAGAAAAACCCTATTCTTGCTCGTACTGCGAGAAGAGTTTTACTAAAGCGGAGATATTGCAACAACACGAAAGAGTGCACACTGGAGAAAAACCACATGTTTGCACAATATGCGGTAGAGGCTTCAGTCAACAAACTCCACTAAAAAATCACATGAAGATTCACACCGGAGAGCGACCTCATGTTTGCCCTTTGTGTGACAAGGGATATGTGTCTAAAACCGCTTTAAAGCTACACATGCCTTCATGCGAGGGAAAGGatacGGAGCAACATGAGAAGCAAGTGTCTTATCGAAAGAGCAAACATTTCGAAGATTATCCATCAAGTGTGTTGGAACAGAAAATGGTAATTGAACCAGGTCATTCAAGGGAAGAATCTAACTCAAATATGATATTGCCAATACAACttaagaataaacaaaaatgcacAACAAGCAAGTATGATGAAAATTACAGCTTTCTCAAAGAATGTCCTTCTTTGGTAGCTAAACTTAGTTGCACCAAATGTTACTTCGAGTGTAGTACTATAGAGGAAATGAAAAGTCATTGGGGGGGACATCAGGAAGAAGACAGTTATCCCCAGATACAAACACAAGAAGAATCAGCAATGTCAGAATTATGTGAATCCCGCAAAGATTTagtttctaataaaaaattgctcAGGGGGCAGAAAAGGAAtcagaaatatgtaaaatctACGAGCTCTACTACAGCGAGCTCTCTTTTAGAACGACCATACACTTATGATAGAATTCAAAGAGAATTCACTTGCACTAAGTGTGGCTTTCAATGTGACACTAAAACAGAAATAAGGAACCACTTAGACGATCACGAGGAAGAAGTTAGTTGTCCTAAGTGTGCTAAACCGTTCAAAGGAATTTACAAATGTGCCCTCCATTCCATCGAACACAACAAAGACTTCTATAGCTGCCCAAGTTGTGAATACACAGGAAGTGATAAATGCATGAGGGAGCATGTTAGAATATCTCACTTGAAGAAGTTCAGGTATATTTGTAAACACTGCGGGAAAGGTTTTGgcgattataaatattgtaaggAACATGAAAACAACCATGTGGATAAAACAGCTAAGTTTAAATGTGTTGTATGTAATAAGAGATTTATGTATTCAGCATACTTACGTGCTCATCAAGTTAATAATCATGAAGTAACTACAGGCTTGGGGAACCCGAGATACCAGTGCAAAGTTTGccagaaaaattgtaaaacggGTTTTAATCTTAAGAGGCATAAGATCGTCCATTTAAAGGATTCCGAACGAGAAAAGCATTTGTGTGATGTGTGCGGGAAGGAACTTTCTTCTCGAGAGAAGTTAAAGCTCCACTATCGCGCGCACACCGGAGAGAAACCCTACTCTTGCTCTTACTGCGAGAAGAGTTTTACTAAAGCGCAGATATTGCAACAGCACGAAAGGGTGCACACTGGAGAAAAACCACATGTTTGCACAATATGCGGCAGAGGCTTCAGTCAAAAAACTCCACTAAAAAATCACATGAAGATTCACACCGGAGAGCGACCTCATGTTTGCCCTTTGTGTGACAAGGGCTATGTGTCTAAATCCGCTTTAAAGCTACACATGCCTTCATGCGAGGGAAAGGatacgtaa
- Protein Sequence
- SVRERPYTFDRIEGEYTCTKCGFQCDTKKEIDDHLDDHEEEVSCPQCAKVFKGIYKCALHSIEHNKDLYSCPSCEYTNNSNRSLLHHVRITHLKKYRFVCKHCGKGLNDYKFYKEHEHNHVDNTAKFRCLVCNKRFMYSSYLRGHQVFNHVVTTGLGNTKHQCKVCQKVCPTPSNLARHMVVHVKDSEREKHLCDVCGKGLCSQEKLKIHYRTHTGEKPYSCSYCEKSFSTKSTLVQHERVHTGEKPYVCRICGRGFTQPNPLKNHMRIHTGERPHVCPLCDKGYMSKAALKLKPEEESTKSEPCEPPNKKILRRRKRNQTYVKSTSSATASSLLERPYTYDRIQREFTCTKCGFQCETKKEIGDHLDDHEEEVSCPKCAKPFKGIYKCALHSIEHNKDFYSCPSCEYTGNDRCMREHVRMSHLKKFRYICKHCGKGFGDYKFYKEHENNHVDTSAKYKCVVCNKRFMYSSYLRGHQLYNHEVTTGLGSTRYQCKVCEKIYQTASNLKRHMIVHLKDSERKKHLCDVCGKELSSQEKLKLHYRTHTGEKPYSCSYCEKSFTKAEILQQHERVHTGEKPHVCTICGRGFSQQTPLKNHMKIHTGERPHVCPLCDKGYVSKTALKLHMPSCEGKDTEQHEKQVSYRKSKHFEDYPSSVLEQKMVIEPGHSREESNSNMILPIQLKNKQKCTTSKYDENYSFLKECPSLVAKLSCTKCYFECSTIEEMKSHWGGHQEEDSYPQIQTQEESAMSELCESRKDLVSNKKLLRGQKRNQKYVKSTSSTTASSLLERPYTYDRIQREFTCTKCGFQCDTKTEIRNHLDDHEEEVSCPKCAKPFKGIYKCALHSIEHNKDFYSCPSCEYTGSDKCMREHVRISHLKKFRYICKHCGKGFGDYKYCKEHENNHVDKTAKFKCVVCNKRFMYSAYLRAHQVNNHEVTTGLGNPRYQCKVCQKNCKTGFNLKRHKIVHLKDSEREKHLCDVCGKELSSREKLKLHYRAHTGEKPYSCSYCEKSFTKAQILQQHERVHTGEKPHVCTICGRGFSQKTPLKNHMKIHTGERPHVCPLCDKGYVSKSALKLHMPSCEGKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -