Basic Information

Insect: Quadriops clusia
Gene Symbol: -
Assembly: GCA_033557875.1
Location: JAWQRP010013799.1:2659-4642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.3e-05 0.0027 18.9 4.0 1 23 174 196 174 196 0.96

2 14 0.00052 0.043 15.1 0.2 1 23 202 224 202 224 0.95

3 14 0.0014 0.11 13.8 0.4 3 23 232 252 230 252 0.97

4 14 7.5e-07 6.2e-05 24.1 1.4 1 23 258 280 258 280 0.99

5 14 0.00034 0.028 15.7 1.4 1 23 286 308 286 308 0.97

6 14 0.00094 0.078 14.3 4.3 1 23 314 336 314 336 0.99

7 14 1.6e-05 0.0013 19.9 0.4 1 23 342 364 342 364 0.98

8 14 2.5e-06 0.00021 22.5 2.9 1 23 370 392 370 392 0.94

9 14 1.8e-06 0.00015 22.9 0.4 1 23 398 420 398 420 0.99

10 14 2.3e-06 0.00019 22.5 0.3 1 23 426 449 426 449 0.95

11 14 2.7e-06 0.00022 22.4 0.6 1 23 455 477 455 477 0.97

12 14 5.9e-08 4.9e-06 27.6 1.0 1 23 483 505 483 505 0.99

13 14 6.7e-07 5.5e-05 24.2 0.3 1 23 513 535 513 535 0.98

14 14 0.45 37 5.9 0.1 2 23 543 564 542 564 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.3e-05	0.0027	18.9	4.0	1	23	174	196	174	196	0.96
2	14	0.00052	0.043	15.1	0.2	1	23	202	224	202	224	0.95
3	14	0.0014	0.11	13.8	0.4	3	23	232	252	230	252	0.97
4	14	7.5e-07	6.2e-05	24.1	1.4	1	23	258	280	258	280	0.99
5	14	0.00034	0.028	15.7	1.4	1	23	286	308	286	308	0.97
6	14	0.00094	0.078	14.3	4.3	1	23	314	336	314	336	0.99
7	14	1.6e-05	0.0013	19.9	0.4	1	23	342	364	342	364	0.98
8	14	2.5e-06	0.00021	22.5	2.9	1	23	370	392	370	392	0.94
9	14	1.8e-06	0.00015	22.9	0.4	1	23	398	420	398	420	0.99
10	14	2.3e-06	0.00019	22.5	0.3	1	23	426	449	426	449	0.95
11	14	2.7e-06	0.00022	22.4	0.6	1	23	455	477	455	477	0.97
12	14	5.9e-08	4.9e-06	27.6	1.0	1	23	483	505	483	505	0.99
13	14	6.7e-07	5.5e-05	24.2	0.3	1	23	513	535	513	535	0.98
14	14	0.45	37	5.9	0.1	2	23	543	564	542	564	0.92

Sequence Information

Coding Sequence: ATGTCAGACGAATTGTTCGAAATTGGCAGGAATATTCCGATAAAACAAGAGTTCGATGAAGATCTTCTCATTGTCGATAGCAATGGTAACGCTATGGCAGTGCCCTTGACTTACCAAATGTTGACGAATGTCCCAATTGTGAAGCAAGAGAAGAATTGGGACGAACTGTGGGATGAGCGCAAAAATTGGGATGATTTTAAGAGCTTCGACCttgataaaaatgatgttaTTGAAGGCTGCCCGAGAAGCTTTGGAGTGGATAGATGTGATCGAAAAGACGATacgttaaataaatgtgaTCTAAATGGTAACGAAAATGATCGTCATGGAAACAATTCGTGTACCTATGACCCGGAGTTTGTCACAGTTAACGTTCCGGTTAAAGTAGAGACCAAAGGTGACAACATGGAAACCAATCCTCAAACGCAAGTTGGGGAAAATGTGCCAACTGAAATAGAGACTAAAATAGAGACCAAAACAGAGGATGCCTCAGAGCAAGAAGACTCGAAGACAAGGCCACACTTCTGTAACCAATGCGGAAAGAGCTTCAAGCGCCTTTGGCACCTAAAGGGACACTTACTGATTCACCTGCGGGAAAAGAAATATGTTTGTGAATTCTGCGATGAACGGTTTAGCTTCCAGAAGGAACTGAATGGTCACGTCGGAATCCACACGGGAAAGCGCAAAATAGCTTGTGACGTTTGCAACAAGTCATTTCCGGCTTTGAGCAAACTGGAGTGCCATATGAGGGTccatactggtgagaaacccTATCGGTGTGAATTCTGCGATAAGCGTTTCACTGTAAAAGGGAACCTAACTGAACATCAGAAAATACACGTTGGGGAGCGAATGCATAAATGTTTGCAATGCGACCGCTCATTCACCACTGgaggaaaattgaaaattcacgAGATGGTGCACGCCGGCAAGAGAATCTTCAAATGTAAGGTGTGCGACAAGAGTTTCCTGGAAAACCACCGTCTCCAGAACCATCTAAAGACCCATTTCGGTGTCAAACCCTTTCAGTGCGGCGTGTGTGAGAAGGGCTTCTCCGAAAAAACGAGTCTTAAACAACATTTGCTTGTGCACGCTGACGAACGACCCTATTCCTGCGAACATTGCAATAGAACTTTCACAACCCCATCCGATCTCAAGAAACACAATGTGAGTCACACGAAGATCAAACCCTTCCAATGCGACTACTGTGATGCTCGGTTTGCTGTCAGTAACAATCTCCGACGCCATGTTCGGATCCATACAGGGGATAGGCCATTCTCCTGCAAGTTGTGCGACAAGTCATTTTCAGACCCTAGTGGGCTGACGTACCACGAAAGGGCGGTCCACTCGGGACAGCGTTCGTATGTGTGCAGCATTTGTACCAAGTCTTTCGCTATTAGTGGGCATTTGACCCGACACATGCTGGCACACAGTAATTATAGGCCTTATAAGTGCAAAGAATGTGGTAAAATGTTCAGTCTGAAGACGAACCTGAATGAGCATATGATGGTGCACAAGGGAGAGAAGGCGAGACAGTTTTCCTGCGAAGACTGTGGTAAGGCTTTCGCCAAAAAGGCAACTTTGACCAGGCACGAAAAGATCCACATGAGGACGAAAGAAGAGATCCAGTGCGAAGTCTGCAACGAGACTGTGATTGGGCAGGAGAACTTTGGCCAACACTCTGAgaatcacataaaaaaatcgtaTTCTGTTGAATGA
Protein Sequence: MSDELFEIGRNIPIKQEFDEDLLIVDSNGNAMAVPLTYQMLTNVPIVKQEKNWDELWDERKNWDDFKSFDLDKNDVIEGCPRSFGVDRCDRKDDTLNKCDLNGNENDRHGNNSCTYDPEFVTVNVPVKVETKGDNMETNPQTQVGENVPTEIETKIETKTEDASEQEDSKTRPHFCNQCGKSFKRLWHLKGHLLIHLREKKYVCEFCDERFSFQKELNGHVGIHTGKRKIACDVCNKSFPALSKLECHMRVHTGEKPYRCEFCDKRFTVKGNLTEHQKIHVGERMHKCLQCDRSFTTGGKLKIHEMVHAGKRIFKCKVCDKSFLENHRLQNHLKTHFGVKPFQCGVCEKGFSEKTSLKQHLLVHADERPYSCEHCNRTFTTPSDLKKHNVSHTKIKPFQCDYCDARFAVSNNLRRHVRIHTGDRPFSCKLCDKSFSDPSGLTYHERAVHSGQRSYVCSICTKSFAISGHLTRHMLAHSNYRPYKCKECGKMFSLKTNLNEHMMVHKGEKARQFSCEDCGKAFAKKATLTRHEKIHMRTKEEIQCEVCNETVIGQENFGQHSENHIKKSYSVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -