Qclu000236.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Quadriops clusia
Gene Symbol
-
Assembly
GCA_033557875.1
Location
JAWQRP010000029.1:29902-32643[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00018 0.015 16.6 1.6 1 23 15 37 15 37 0.99
2 22 0.00089 0.073 14.4 3.9 1 23 40 62 40 62 0.99
3 22 0.024 2 9.9 2.5 5 21 71 87 69 88 0.93
4 22 6.7e-06 0.00055 21.1 0.2 1 23 95 118 95 118 0.97
5 22 0.0002 0.017 16.5 0.4 1 23 123 146 123 146 0.96
6 22 0.026 2.2 9.8 1.9 2 23 155 175 155 175 0.97
7 22 0.0062 0.51 11.8 0.2 2 23 181 201 180 201 0.96
8 22 3.2e-07 2.6e-05 25.3 2.5 1 23 207 229 207 229 0.98
9 22 1.2e-05 0.001 20.3 1.7 1 23 235 257 235 257 0.99
10 22 0.00052 0.043 15.1 0.7 1 23 263 286 263 286 0.96
11 22 0.16 13 7.3 0.1 1 23 315 337 315 337 0.97
12 22 0.15 12 7.4 2.6 1 20 375 394 375 396 0.92
13 22 6.7e-05 0.0055 18.0 2.0 1 23 411 433 411 433 0.99
14 22 0.00026 0.022 16.1 2.2 1 23 436 458 436 458 0.99
15 22 0.024 2 9.9 2.5 5 21 467 483 465 484 0.93
16 22 8.1e-07 6.7e-05 24.0 0.3 1 23 491 514 491 514 0.97
17 22 9e-05 0.0075 17.5 0.3 1 23 519 542 519 542 0.96
18 22 0.28 23 6.6 0.3 2 23 551 571 551 571 0.95
19 22 1.7 1.4e+02 4.1 2.6 2 23 577 597 576 597 0.90
20 22 8.3e-07 6.8e-05 24.0 3.0 1 23 603 625 603 625 0.98
21 22 6.3e-06 0.00052 21.2 5.4 1 23 631 653 631 653 0.99
22 22 0.00011 0.0087 17.3 0.7 1 23 659 682 659 682 0.97

Sequence Information

Coding Sequence
ATGAAGGGTCCCATCGGCTGTACCGGAAGAACGAAACTGTCCTTCAAATGTGATTTTTGCCCAGAAATTTTCACTGAAAAAGGTGAATTCTTCCAACACCGAAAAACACATGATGGTTACAGTTGTCCTCACTGCGatagaaaatttcttatgCCCCATTTCTTGGAACGCCATGTCCGAACTCACACTAAAGATAATTACATAAAGTGCGAGTGCGGGCAACTTTTCAGTCATCAAACACATTTGCAAAAGCACCTAAAAAACAAGCTGTGCAGAGGCGGCTTCATGTGCGAAGTGTGCaacaaaatgttttcccaGAAAGGAGGTTGGACTGTTCACATGAATTCTGTGCACTTAGGAGTGAGATTCGAGTGCAAAATATGCGATAAAGTGTACACATTGGAACAGAGTTACAAGATGCACATGGACATGGTCCATAATCCTAATTCCGTAAAAACGGAAAAATGCCCTGTTTGCCAGAAGGACATAAGAAAACGTCATCTTAAATCCCACATCAGCGTGCACAATAATGGTAAAAGTGTTTGCCCCCAATGCGGAAAACGTCTATATCCAGAATCTCTAAAAACACATTTGTTAAACCACCAGGGGATTAAACCCTACAAATGTGACCATTGTGGTAAAGCATTTAGTTCGAAAGCTTATCTGAGAAACCACAAGATGATACATACGGACGTAAAGCCCTATGAATGTCCCATATGCCAGAAGAAATTCATTCAACATGGTTCTAGGAAAATTCACATCAGAACACACACGGGTGAAAAACCCTACGAATGTAATCTTTGcgataaaacattttctgctGGGAATTTGCTAAAAGTGCATAAACAGAAGCAGCACACGCTGCTTGATTACAGATGTGACGAATTAGTGGTGAAACTAGACCCGCTCATAGAACAAACCGTGAAAACTGAGGTGGAGGACTATCAGTGCGACATCTGCTACGGACTATTTGAGAATGATGAAGAATACTCTGTACACATGCAAGAGCATTCCCTTTTTAAACAGGAAATTGGTTCGCCATCGGCAGACGAATCGGAAAGTGCAACTACCTCAAATAAGAAAAGAGgacaaaagaaaagaaggggttcaacaaacaaaaaatacaaatgcaaAAGCTGTTCAATAACCTTTACTAATAAGCTTCTGTTCGATGCACACACTTGCAACATAAAGGGTTTCATTGGTTTTACCAGAGGGAAAATACTATCTTTCAAGTGTGATTTTTGTCCAGAAATTTTCACTCGCAAATGGGAGTTTTTCGATCACCGAAAAACGCACGATGGTTACAGTTGCCCTCACTGCGATAGGAAATTTCTAATGCCCTATTTGTTCGAACGTCACGTCCGAACTCATACTAAAGATAATTACGTAAAGTGCGAGTGCGGGCAACTTTTCAGTCATCAAACACATTTGCAAAAGCACTTAAAAAACAAGCTGTGCAGAGGCGGCTTCATGTGCGAGCTGTGCAACAAAATGTTTAGCCAGAAGGGAGGGTTAACGGCTCACATGAATTCTGTGCATTTAGGAGTGAAATTCGAATGTAAAATATGCAACAAATCTTATAGAATGGAGCCTAATTATAAGGCGCACTTGGCAAGAGCCCATGATcctaattttgtaaaaactgaaaaatgcCCCCTTTGTAAGAAGGAAATAAGCAAAACTGGTCTGTCAAAACATATTGAGGCACACAAGACTGGTAAAAGCGTTTGCCCCGAATGTGGGAAACGTATGTGGCCAGATTCTCTAAAAACACATTTGTTAACCCACAAGGGGATTAAACCCTTCAAATGCGAACACTGCGGCAAAGCATTTAGTTCGAAAGTTTACCTGAAGAACCACAAGATGATACATACGAACGAGAAGCGGTATGAATGTCCCATATGTCATAAGAAATTCACCCAACATAGTTCAAGGAAAATTCACATCAGGACGCATACTGGTGAAAAACCCTACGAATGCAATGTTTGCGACAAGAAGTTTCCTACGGGGAATTTGCTCAAAGTACATAAACAGAAGCAACATACGCTACTTGAATAA
Protein Sequence
MKGPIGCTGRTKLSFKCDFCPEIFTEKGEFFQHRKTHDGYSCPHCDRKFLMPHFLERHVRTHTKDNYIKCECGQLFSHQTHLQKHLKNKLCRGGFMCEVCNKMFSQKGGWTVHMNSVHLGVRFECKICDKVYTLEQSYKMHMDMVHNPNSVKTEKCPVCQKDIRKRHLKSHISVHNNGKSVCPQCGKRLYPESLKTHLLNHQGIKPYKCDHCGKAFSSKAYLRNHKMIHTDVKPYECPICQKKFIQHGSRKIHIRTHTGEKPYECNLCDKTFSAGNLLKVHKQKQHTLLDYRCDELVVKLDPLIEQTVKTEVEDYQCDICYGLFENDEEYSVHMQEHSLFKQEIGSPSADESESATTSNKKRGQKKRRGSTNKKYKCKSCSITFTNKLLFDAHTCNIKGFIGFTRGKILSFKCDFCPEIFTRKWEFFDHRKTHDGYSCPHCDRKFLMPYLFERHVRTHTKDNYVKCECGQLFSHQTHLQKHLKNKLCRGGFMCELCNKMFSQKGGLTAHMNSVHLGVKFECKICNKSYRMEPNYKAHLARAHDPNFVKTEKCPLCKKEISKTGLSKHIEAHKTGKSVCPECGKRMWPDSLKTHLLTHKGIKPFKCEHCGKAFSSKVYLKNHKMIHTNEKRYECPICHKKFTQHSSRKIHIRTHTGEKPYECNVCDKKFPTGNLLKVHKQKQHTLLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-