Qclu011387.1
Basic Information
- Insect
- Quadriops clusia
- Gene Symbol
- -
- Assembly
- GCA_033557875.1
- Location
- JAWQRP010003602.1:6340-9370[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.2e-05 0.00097 20.3 0.4 1 23 45 67 45 67 0.97 2 22 8.2e-06 0.00068 20.8 4.6 1 23 83 105 83 105 0.99 3 22 0.0077 0.64 11.5 0.3 1 23 126 148 126 148 0.97 4 22 0.0053 0.44 12.0 0.5 1 23 152 174 152 174 0.94 5 22 0.0044 0.36 12.2 0.7 1 23 179 202 179 202 0.98 6 22 0.043 3.6 9.1 6.7 1 23 208 230 208 230 0.98 7 22 2.5e-05 0.0021 19.3 0.6 1 23 237 260 237 260 0.95 8 22 0.00014 0.012 16.9 2.9 2 23 272 293 271 293 0.98 9 22 1.8e-05 0.0015 19.7 0.7 3 23 306 326 304 326 0.96 10 22 3.7e-05 0.003 18.8 1.2 1 23 332 354 332 354 0.98 11 22 3.8e-05 0.0032 18.7 0.6 1 23 360 382 360 382 0.98 12 22 5.1e-05 0.0042 18.3 1.0 1 23 450 472 450 472 0.98 13 22 0.015 1.2 10.6 0.3 1 23 491 513 491 513 0.98 14 22 0.00022 0.018 16.3 2.4 1 23 517 539 517 539 0.98 15 22 0.00038 0.032 15.6 1.0 1 23 544 567 544 567 0.98 16 22 0.01 0.83 11.1 3.0 1 23 573 595 573 595 0.87 17 22 0.00098 0.081 14.3 0.8 1 23 602 625 602 625 0.95 18 22 0.0014 0.12 13.8 1.9 2 23 637 658 636 658 0.98 19 22 0.084 6.9 8.2 2.8 3 23 671 691 669 691 0.95 20 22 2.2e-06 0.00018 22.6 2.3 1 23 697 719 697 719 0.99 21 22 2.4e-06 0.0002 22.5 2.2 1 23 725 747 725 747 0.99 22 22 0.19 15 7.1 0.0 1 22 753 774 753 774 0.92
Sequence Information
- Coding Sequence
- ATGAtgataaaagaagaaatagaaatgcTGATGGCACAAGACATAAAAGTTGAGGCACTAGATCTGCCCGATATATCCATACCTATCGATTCTTCTCAAGAGGAATTCTTTGCATCCGGGAAACACACCATTTATGCATGCCAattatgtgatattacttttaacaataaagATCTGTTGATTAAACATCAAATGCAGCATTCTCAGAGGATCTTGTCTACAGGTGGCAATAGTAGGAAAAGGTCATACAGTTGTAAATTTTGCGGAGAATGTTTCACGAATTGGAAGTTGTTATCCCAGCATAAACGAACACACAAAACACCTCCAGAAGATGTTAAACAATACGAATATACCTTCAATGAAGAGGAGGATGTTTACACTTGTAACACTTGCGAAATTGAGTCCAGGACGAAGGAAGAAATGGAAAAACACTTGGAAGAACACAtcgaaaaatataattgccCCGATTGTTCGAAATTGTTCAACGATGCTTATAAATACTCCGTTCATGTGTACGAGCACAATAGACAATACTTCCGATGTCCGATTTGCGAGTACAAAACAAACCGTCGCACTGCGATTTTATCGCATATTAAACGAATGCACTTGAAGAAGTTTACTTATCAATGTCAACACTGCGGAAAGGGTTTCGATGATTGTAAGTTGCACCAAGAACATGAGAGGACTCATTCAGAGGATCCCCCCAAATACGTTTGTGTAGTTTGTGGTAAAAGTTTCCCTTATTCTCGTTACTTGAACACTCACCAAGTTCGATACCATAACGTAACGATCGATGGTGTTACCATGTCGAACCAGTGCAAAGTTTGCCACAAAGTGTTCGCTAAAACTATATCGCTTTTAAACCACATGAAAAAACATTCGGAAGTTCATGTAAATcgagaaaaaaaacatttgtgcGAGGTTTGCGGGAAGGGCTACGCTCGGCAGGATAAATTGAAGATCCACTATCGCATTCACACCGGATATAAGCCGTATAGTTGCTCGTACTGTAGCAAGAGTTTCATAAAGAAggagtatttggtgttgcacGAGCGGATACACAGTGGGGAAAAACCGTATAGTTGCGAGTATTGCGGGAAGTGCTTTAACCAAGGGGCACCATTGAGGATTCACGTCAGGGGTCACACTGGGGAAAGGCCTTACCTTTGCCATTTATGCGAAGGAGGgGTGAAGATCGAGAACGAAGTGACCATCAAAGAAGAATGGATTTCGAATGATGAATCAGACGAAGAGTACACGCCTCCGTTATTCCTGAAGTTACTTCGATCACGTAAAATCCAAAACAGAATCTCAAATGATTCCAaggaaatgaaacaaaaaaaaatttatccgTGTCCAGTGTGCAACGAACAATTCTCCAACACTAAAAAATTATCCCGtcataagaaaatacataaaccTCCGGAACTCAAACAACACACTTATTCCTTTAATGCAAATGAAGATGTATACACTTGCAACACATGCGAGCTCGAGCTTAAGACGAAAGAGGAAATCGAACAGCATTTGGACACCCACGAAGACAAATTCACTTGCCAATATTGCAGAAAAACTTTCATCAGCCCTTACAAATATTCTGTTCACGTTAACAAGCACACTAACGATGATTTTCAATGTCCTTTTTGTGACTTTAAGCGACCTTCTTCCTCCTCTTTAAATACCCACATCAACCGGATGCACCttcataaattcaaatacatttgTAATCATTGCGGAAAAGGATTCTCGGACAAAAGGTTGCATAAAGAACATGAGGAAAATCACACAAGTGAAGGGCAACGATTTGTTTGTGTCGTGTGCAACAAAACTTATCCTTTctcaacatatttaaaaatacatcaagTTCGATACCATCGAGTGAACATAAAGGGTGTTATTCTGAAGAATCAGTGTGAAGTTTGCCGGAAAGTGTTTTCGAAGATGACCACTTTGGCCACTCATAAGAAGCGGCATGAGAAAAATTCCGAGGCGAAGCTGAAGACCCATCTGTGTGACTTATGTGGGAAAGGGTACCAATGTGCTTCTAAACTGAAAGTTCATTACAGGGTCCACACGGGATTTAAACCGTATCAATGTCAATACTGCGAGAAATCATTCACGAAGAAGGATTACCTGAACATGCACGAACGCATTCACACTGGAGAGAAACCCTACAGTTGCGAGTATTGCGGGAAATGTTTTAATCAAACTGCTCCGTTGAGGAACCATGTCCGCACCCACACTGGGGAGAAGCCTTATATTTGCATTATATGCCAGTCGGGTTTTGTATCCAAAGGGGCTTTGAACTTACATTTGAGGACTTGTACTGGGGGTCTATAA
- Protein Sequence
- MMIKEEIEMLMAQDIKVEALDLPDISIPIDSSQEEFFASGKHTIYACQLCDITFNNKDLLIKHQMQHSQRILSTGGNSRKRSYSCKFCGECFTNWKLLSQHKRTHKTPPEDVKQYEYTFNEEEDVYTCNTCEIESRTKEEMEKHLEEHIEKYNCPDCSKLFNDAYKYSVHVYEHNRQYFRCPICEYKTNRRTAILSHIKRMHLKKFTYQCQHCGKGFDDCKLHQEHERTHSEDPPKYVCVVCGKSFPYSRYLNTHQVRYHNVTIDGVTMSNQCKVCHKVFAKTISLLNHMKKHSEVHVNREKKHLCEVCGKGYARQDKLKIHYRIHTGYKPYSCSYCSKSFIKKEYLVLHERIHSGEKPYSCEYCGKCFNQGAPLRIHVRGHTGERPYLCHLCEGGVKIENEVTIKEEWISNDESDEEYTPPLFLKLLRSRKIQNRISNDSKEMKQKKIYPCPVCNEQFSNTKKLSRHKKIHKPPELKQHTYSFNANEDVYTCNTCELELKTKEEIEQHLDTHEDKFTCQYCRKTFISPYKYSVHVNKHTNDDFQCPFCDFKRPSSSSLNTHINRMHLHKFKYICNHCGKGFSDKRLHKEHEENHTSEGQRFVCVVCNKTYPFSTYLKIHQVRYHRVNIKGVILKNQCEVCRKVFSKMTTLATHKKRHEKNSEAKLKTHLCDLCGKGYQCASKLKVHYRVHTGFKPYQCQYCEKSFTKKDYLNMHERIHTGEKPYSCEYCGKCFNQTAPLRNHVRTHTGEKPYICIICQSGFVSKGALNLHLRTCTGGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -