Basic Information

Gene Symbol
Kdm5a
Assembly
GCA_033557875.1
Location
JAWQRP010003249.1:2457-13704[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.2e-25 6.6e-22 78.6 0.0 2 89 32 115 31 115 0.95
2 3 3.3 1.9e+04 -3.0 0.0 28 46 706 724 700 762 0.64
3 3 5.1 2.9e+04 -3.6 0.0 48 63 948 963 947 973 0.81

Sequence Information

Coding Sequence
AACTGGCAGCCGCCTTTTGCAGTCGACGTAGACAAGCTGAAGTTCACGCCGAGGATTCAAAGGCTGAACGAGCTCGAAGCGAAGACTCGAATCAAACTAAACTTCCTGGATCAAATCGCCAAGTTCTGGGAGCTCCAGGGCTCCTCTTTGAAGATCCCGATGGTGGAGAAGCGCGCCCTCGACTTGTACACGCTTCATAGACTTGTCCACAGTGAGGGCGGCTTTTCGACTGTTAGCAAAGATCGGAAGTGGTCGAAGGTGGCCACCTTCATGGGTTACCCCCAGGGCAAGGGTTTGGGCACCATTTTGAAGACGCATTACGAAAGACTCCTCTATCCTTATGAGATTTTCTGCATTGAGAAGGCCACGAAGGCTAGGGGAGAGGCGCCGGATGCTGAAGTGAAGCCGGATgtgaaattggaaataaaattagaaaacgaTAATGGGAAGGTTAAACCGGAGAATAAATCGCCGACCAAAGCGAATAATATGAAACATGGGTGCAGAAGGCGAAAGGTTGATTCGGAGATAAAGGAGAGACAGAAAATGAAGGAAACTAAGAGTTCTTTGAGGAAGGAGGATGATGAGGGTTCATTGGATGgagaaaacaataaagagTTAAAAAGACTGCAGTTTTATGGGGCCGGACCGAAGATGGCTGGCTATAACATCGAGAAGAAAGACGAGAAGACTAGAGGAAAGCTTCTGAACATAGATTACGATCCTcTAGCCAAGTACGTTTGTCATAATTGCGGCCGAGGCGATGTGGAGGACCACATGCTGCTTTGCGATGGTTGCGATGATAGTTATCACACTTTCTGCCTAATGCCCCCGCTTCAAGAGATTCCTAAAGGTGACTGGTGTTGTCCGAAGTGCGTCGCTGAGGAGGTTTCCAAACCCACGGAAGCCTTCGGGTTTGAGCAAGCCCAGCGGGAATACACTCTCCAGCAATTCGGAGAAATGGCGGACCAGTTTAAGAGCGAGTATTTCAACATGCCTGTCCACTTGGTCCCCACGCAAGTTGTCGAGAAGGAGTTCTGGAGAATCGTCTCTTCCATTGACGAAGACGTGACTGTTGAATACGGAGCAGACTTGCACACCATGGATCACGGATCCGGGTTCCCGACAAAGGACTCCCTAAACCTCTTCCCTGTTGACCAGGAATACGCTTATTCGGGAtggaatttaaacaatttgccGGTTCTCGAAGGCTCCGTTTTAGGACATATCAATGCGGATATTTCGGGGATGAAGGTTCCCTGGATGTACGTCGGAATGTGCTTTGCGACATTTTGCTGGCACAATGAAGACCACTGGAGTTATTCCATTAACTATCTCCACTGGGGAGAACCAAAAACTTGGTACGGGGTTCCCGGATCAAAAGCAGAATTGTTTGAAGAAACGATGAAGTCAGCGGCTCCGGAATTGTTCCAATCGCAACCAGACTTGCTTCACCAATTGGTCACGATAATGAACCCGAACATCCTGATGAACGCGGGTGTTCCGGTTTTTAGAACGGATCAACATGCTGGTGAATTCGTGGTAACTTTTCCGAGAGCCTATCACGCTGGATTTAACCAAGGCTACAACTTCGCAGAAGCTGTGAACTTTGCCCCAGCTGACTGGGTGGCTATGGGCAGGGAATGTGTGCTTCATTACTCACAACTGAGGCGGTTTTGCGTGTTTTCACATGATGAACTCATTTGCAAAATGGCTACCAATTCCGAAAACCTGGACCTAACTGTTGCTGCTGCTACTTATCAAGACATGCTGCGAATGGTAGAGACAGAGAAGAAGCTCCGCAAATCTCTTTTGGATTTGGGAGTTACAAATGCAGAGCGCGAAGCCTTCGAACTCCTTCCAGATGACGAACGGCAATGCGAAGTGTGCAAAACAACTTGCTTCATGTCGGCCATCATTTGCACATGTTCTCCAGACGTTATCGTGTGTCTCAGGCATCACAGCGTCCTGTGCCAATGTCCCCCGAAGAACAGAACCCTAAGGTACAGGTACACCCTAGACGAGCTTCTTCCGCTGCTGAGGAACTTGAAGAGTAAAGCGGAGTCTTTCGACAAATGGGTAGACAAGGTTAAAGATGCTTTGGACCCGAACACTCAGAAAACCCTGGACTTGCAGGAGCTGAAAGCTCTTTTGAATGAAGCGAATGGGAAGAATTTTCCCAAGTCTGATTTAATACAAACTTTGGCCAACGCCATTGAAGACGCGGAGAAATGCCAAAGTGTCATCAAGCAACTTGATTTGAACAAGATGCGCACGAGGAATTCTTTCGataacaaaagtaaattgaCTTTTGAGGAATTAACATTGTTTTGCGAGGAGATTGACAGCTTGGCTTGCGTGCTCGACGAAGAAAAGATCATTAAGGAACTATTGGGGAGAACTTTGAAGTTCGAAAAGGACAGCAAGAGTTTGTTGGAGATGCCGTTAAAGGATTGCCATCCTGGGGAAGTGGAGAAATGCATCGACGATAGCACAGGATTGTGCATCGACTTACCTTCATTAACGCCGTTAATGGAGCGGTTGCGGCAGTTGAAGTGGTTGCGAGAGGTACAAGACACTCAGTCGAAAGTTGATATTCCAGATATTCAGACTTTGAAAGGTTTACTTGAATCCGGCCTACACTTACCTTCCGATCAAGTTGTCGTTAAAGTCCTACATGAAATTCAGGGGTTGATAAACGAAGCTGAAGATTGGGAGGAGCAAGCCAAAGCTTTATTGAATCGAAAGAGCGGACAGGAGCTTATTTTCGAAGCGGAAACGCTCTTGAAGGAAGCAGATAGAATTAGTGTATATCTTCCGACTGAATTGACGCTCCAAGAAAGCGTTCAGAGCGCAAACGAATGGTTTGAGATCTTGAACACTATGAACGCTTTGGAGTTCTACCCGTACCTGAGTGCCGTGGAAGATTTAGTAAAGAAGAGTCGGAATTTTATGTTCCAATTGGAAGAAATCGAACGGCTGAAGTCTTTCATAACGGCGGCACATGCTTGGAAGGAGAAGACAAGTCGCACATTCTTGCGCAAAAATTCCGTAACAAGTCTCATGGAATCTTTGTCTCCAAGGATTCAGATTCCGGTGGTCCGGGGAAAACGGAAAACTCATGAAGACGAACCCGCCATTAAGTTAAGTGAAAACATGGATCCGGCTGCGGTGGTTGCTGCTTTTAAAGACGCCGAAGATAAGGAAATGCACGCGATTAACCACATTCGAAGTCTTAACTCCAGTAAGTCTTTGGATCCCCAAGAGGCGTCAGTTTTCTGCGTCTGTTCAAAAGGGGTCCACGGACTTATGATGCAATGTGAATTATGCAAAGACTGGTTTCACTCAACTTGTGTACAATTACCGAAAATCGCCTCGATGAAGATTAAAGGAAACGTCACGAGCATGCTGCTTCATATCGGGTACAAAGATAGCAAATTTTTATGTTCCATGTGCTTCCGAACCCGTAGACCTCGACTAGAGTCAATTTTGAGTCTACTCATGTCTTTACAAAAACTTCACACGAGACTCCCAGAAGGCGAAGCCTTGCAATGCTTAACCGAACGGGCAATGAACTGGCAAGATCGAGCTAGGCAAATGCTCCAAACAAAAGAATTAGAAGCGGCAATGTCGAAGCTGAGTTTAATGACGCAAAAATTTACGGAAGCAGCCACTCGCTTCAAgtcagaaaaaataatcagCAATGAGTTGAGGAAGGCAGCGAGCAACCCGGAACTTCACCAACGAGTACAAGAAATCACTCCATTAAGCGGATTAAGTCCAGACGAGACAGCTGAAAGTGTTTCTTCGGAAGAAAGCTTTGATACAACTGATGAACATGCCTATTCTCTCCACATTTCAAAGTTCGACGATACTGACTGCCACATCTCTTTGAGTCCTCAATGTTACAAGCAATTAGAAGATCTCGTTGTAGAGGGCGACCTCTTGGAAGTTTCTTTGGATGAGACTCAACAACTTTGGCAGCTTCTCCAAGTTGCTAAGGATCCTGAACGTGAGATTATTATTGACTTTGATATGTCTCCAAAGGCGAGTCCAGCCCGCAGAGGGCGGAAGCGGCGTCCAGTTGAGCCCGAAATGAGCCCAGCAAGCAAACAAGTGAAAGTAGAAGAGAGAAAGAAACCGATGCGGCAGAGGAAAGCGAGGGAAACCAAAGAGAACGGAAAACGTCAAGAGAAGATGCGGAAATCTCGGGGTAACAATTCTCAGAATTCCGACGACGAAGACACGGAAGACTGCGCGGCATCTCCGTGTCTTCAGCCGTCGGGCGAAAACGTGGACTGGGTGCAATGTGACGGTGGCTGTGAGTTGTGGTTTCACATGACCTGCGTCGGGCTATCCGCCAAAGACATTAACGAAGACGAAGACTACATCTGCATCGAGTGCTCCAGGAACAACTGCAAGTCCCCACTGGCACAGCTTAACGGCAGCATACCAGACTTTTTACAGCCTTCCACGTCACGTGACAATTTCTAA
Protein Sequence
NWQPPFAVDVDKLKFTPRIQRLNELEAKTRIKLNFLDQIAKFWELQGSSLKIPMVEKRALDLYTLHRLVHSEGGFSTVSKDRKWSKVATFMGYPQGKGLGTILKTHYERLLYPYEIFCIEKATKARGEAPDAEVKPDVKLEIKLENDNGKVKPENKSPTKANNMKHGCRRRKVDSEIKERQKMKETKSSLRKEDDEGSLDGENNKELKRLQFYGAGPKMAGYNIEKKDEKTRGKLLNIDYDPLAKYVCHNCGRGDVEDHMLLCDGCDDSYHTFCLMPPLQEIPKGDWCCPKCVAEEVSKPTEAFGFEQAQREYTLQQFGEMADQFKSEYFNMPVHLVPTQVVEKEFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKDSLNLFPVDQEYAYSGWNLNNLPVLEGSVLGHINADISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEPKTWYGVPGSKAELFEETMKSAAPELFQSQPDLLHQLVTIMNPNILMNAGVPVFRTDQHAGEFVVTFPRAYHAGFNQGYNFAEAVNFAPADWVAMGRECVLHYSQLRRFCVFSHDELICKMATNSENLDLTVAAATYQDMLRMVETEKKLRKSLLDLGVTNAEREAFELLPDDERQCEVCKTTCFMSAIICTCSPDVIVCLRHHSVLCQCPPKNRTLRYRYTLDELLPLLRNLKSKAESFDKWVDKVKDALDPNTQKTLDLQELKALLNEANGKNFPKSDLIQTLANAIEDAEKCQSVIKQLDLNKMRTRNSFDNKSKLTFEELTLFCEEIDSLACVLDEEKIIKELLGRTLKFEKDSKSLLEMPLKDCHPGEVEKCIDDSTGLCIDLPSLTPLMERLRQLKWLREVQDTQSKVDIPDIQTLKGLLESGLHLPSDQVVVKVLHEIQGLINEAEDWEEQAKALLNRKSGQELIFEAETLLKEADRISVYLPTELTLQESVQSANEWFEILNTMNALEFYPYLSAVEDLVKKSRNFMFQLEEIERLKSFITAAHAWKEKTSRTFLRKNSVTSLMESLSPRIQIPVVRGKRKTHEDEPAIKLSENMDPAAVVAAFKDAEDKEMHAINHIRSLNSSKSLDPQEASVFCVCSKGVHGLMMQCELCKDWFHSTCVQLPKIASMKIKGNVTSMLLHIGYKDSKFLCSMCFRTRRPRLESILSLLMSLQKLHTRLPEGEALQCLTERAMNWQDRARQMLQTKELEAAMSKLSLMTQKFTEAATRFKSEKIISNELRKAASNPELHQRVQEITPLSGLSPDETAESVSSEESFDTTDEHAYSLHISKFDDTDCHISLSPQCYKQLEDLVVEGDLLEVSLDETQQLWQLLQVAKDPEREIIIDFDMSPKASPARRGRKRRPVEPEMSPASKQVKVEERKKPMRQRKARETKENGKRQEKMRKSRGNNSQNSDDEDTEDCAASPCLQPSGENVDWVQCDGGCELWFHMTCVGLSAKDINEDEDYICIECSRNNCKSPLAQLNGSIPDFLQPSTSRDNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-