Pnym109243.1
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- stc
- Assembly
- GCA_963573305.1
- Location
- OY754335.1:12122263-12134619[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.67 1.1e+05 -3.5 0.4 5 7 48 50 45 52 0.51 2 16 1e-06 0.16 15.0 11.3 1 18 55 72 55 73 0.93 3 16 0.19 3e+04 -1.8 0.8 6 10 108 112 107 115 0.53 4 16 9.7e-09 0.0016 21.5 14.7 1 19 118 140 118 140 0.89 5 16 0.27 4.4e+04 -2.3 1.1 5 10 169 174 169 174 0.91 6 16 0.0083 1.3e+03 2.5 5.0 3 11 182 190 180 191 0.87 7 16 0.61 9.8e+04 -3.4 0.5 4 10 195 201 195 201 0.76 8 16 1.4e-11 2.2e-06 30.6 13.8 1 19 207 225 207 225 0.98 9 16 0.19 3.1e+04 -1.8 1.2 6 10 254 258 253 259 0.84 10 16 1 1.6e+05 -5.5 16.6 3 19 261 282 261 282 0.68 11 16 0.62 9.9e+04 -3.5 0.1 7 11 286 290 286 290 0.76 12 16 0.27 4.3e+04 -2.3 0.2 9 11 300 302 298 303 0.76 13 16 0.36 5.8e+04 -2.7 0.6 6 10 308 312 307 313 0.58 14 16 4.4e-09 0.00071 22.6 6.6 1 15 318 332 318 334 0.96 15 16 0.27 4.3e+04 -2.3 1.3 6 10 352 356 352 357 0.80 16 16 2.1e-05 3.4 10.8 14.6 1 19 363 382 363 382 0.97
Sequence Information
- Coding Sequence
- ATGTTGGCTCACATGTGTCTTGTGTTGATGTGCCCCTTACACCCCCCGGGGAGGGGGGGATtttgccACTGTGCACAGAATGAAAGGAGTGTCCCGTGTGTGGCAAGCACTGCTGGGATCGAATTTTACGAGTGTGGGTCGAAGTGTGAACGCATGTTGGATTGCAAGAACCATAAGTGTGAGGCATTGTGTCATCCATCGGAGTGCAGCCCCTGTGCTTTAATGCCCAAGAAAGTCACCAGGTGTCCTTGTGGAAAGGTTGCGTTGGCAGATATTGAAGGAGCCGTTGAGCGTCAGTCTTGTTTGGACCCTGTGCCAACGTGTGGGAAGACGTGTGAAAAAGTTCTCAGTTGCGGTCAACCAGGAAAGAATCACCTCTGCAAGGAATTGTGTCATGAAGGTCCTTGTCCCCCTTGCACCCTGACCACTGCCGTGAAGTGCCGATGTGGTAACATGAATAAGGAAATACCCTGCGTTGAGCTCACCACCAAAGCTGATGATGCACGCTGTAACAGGAAGTGCACCAAGAAACGAAGCTGCTGGAGGCACAAATGTCTTCAGTTGTGTTGCATAGATTTGGATCATGTTTGCCCTATGATCTGCAACCACAACCTAAGTTGTGGTCTCCACAAATGTGAGGAACCATGCCACAGAGGAAACTGTCCACCATGCTGGCGAGCTAGCTTTGAAGAACTTCACTGCGAGTGTGGTGCCAGCGTGATGTACCCACCCATTCCGTGTGGCGCTCGTCCCCCCGAGTGTCCCCAGGTTTGCACTCGTCAGCACACGTGCGCCCACGTTCCTAACCACACATGTCACAGTCAGCCAGAGTGCCCTCCTTGTACTGCACTCACTGAACGCTACTGCCATGGAAATCATGAGCTCAGGAAAAATGTGCCTTGCCATCAGACTGAAATCTCGTGTGGTCGACCTTGTGGCAAGGATCTACCCTGTGGCCGTCACAAATGTATTTTGTTGTGCCACAAGGGATCTTGCACTGTGTTGCCCACCACATCGTCCACGCAGCAGTTGGGTGCCTCCACTCAATGGGTTTGCAAGCAACCGTGCACCACTCCCCGTTCCCTATGTGGTCACCCATGTGGCGTCGCCTGCCATGATGGCTCCTGCCCAGACTCACCATGCAGGGAAATGGCAAGTATTCAATAA
- Protein Sequence
- MLAHMCLVLMCPLHPPGRGGFCHCAQNERSVPCVASTAGIEFYECGSKCERMLDCKNHKCEALCHPSECSPCALMPKKVTRCPCGKVALADIEGAVERQSCLDPVPTCGKTCEKVLSCGQPGKNHLCKELCHEGPCPPCTLTTAVKCRCGNMNKEIPCVELTTKADDARCNRKCTKKRSCWRHKCLQLCCIDLDHVCPMICNHNLSCGLHKCEEPCHRGNCPPCWRASFEELHCECGASVMYPPIPCGARPPECPQVCTRQHTCAHVPNHTCHSQPECPPCTALTERYCHGNHELRKNVPCHQTEISCGRPCGKDLPCGRHKCILLCHKGSCTVLPTTSSTQQLGASTQWVCKQPCTTPRSLCGHPCGVACHDGSCPDSPCREMASIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -