Pnym046951.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrrhosoma nymphula
Gene Symbol
-
Assembly
GCA_963573305.1
Location
OY754329.1:167552257-167567012[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 5.7e-05 0.048 17.1 0.4 1 23 1312 1335 1312 1335 0.97
2 4 6.9e-07 0.00058 23.2 0.9 1 23 1349 1371 1349 1371 0.96
3 4 2.3e-07 0.0002 24.6 2.8 1 23 1377 1399 1377 1399 0.99
4 4 5.6e-05 0.047 17.1 1.5 1 23 1405 1427 1405 1427 0.99

Sequence Information

Coding Sequence
ATGGATCCTGGCGTTCTTAATTTCGCCCAAGTGAAGCCGTTCTCCTATCCATTATCGCTCATTTTGCTCAAGCGTTCCTTCCCGGACCGCCCTGCTTCAGTCCTCGCTGTCGTCTGCCCGAGGATCACCCGCACGATTCCCCACCTCGTCAAACTCCCCCCCGACCCCACCCCCTATACCCACAGCCACCCAACCGAGGAAAGACTACCCATTCGCCCAATAGCGGAATGCATGGGcaagggggagtgggagggagtggAAGGAACCGCGCGTAAAAAGGGGATGGTGGGCGTCTTGCCCTCtaggagggggggggcggaggagggggagaaggtgATGGGGTTGGGAAGGAGGGCGGTTTGTGGGCGAGCGAAGAAGATGGTTTGTTGGAGTGTGGGGGAAATCGAAGAGGGCTCCTCATCTCCTTCCCTTATTATATGCGGTCAGAATATGTATATACTCTTCGCCCTCCCACTCCTCGACTCTTCTGCTGTTCAAACAGTCTCCACCCCGTCCGCGCTACAATTCTCTCCGGCCGGACGATGTACATACCTTCGTACGAGATCTCTTTGCGACGCTCACCGGCAGAGTACGCGAATGTGCATTCTCCCCTTGTCCATTCGCCTCATCTCGCTGCTGTCCCTTCACGCTTCGCCTTCCTCCCTCTCCGGTGGCGCGCCACTCCGGGGGGGAAAACGGCTCGCCTGTCAAATAGGTGGCTTCTTTCCGGACAGTGATGCGAGCGATGTCGGACATCGACGGGCGAAAGAGAAGCAAATCGGCATCCAAGAGATCCAACAAAAGTCACTCAAGTGGATAAAAATCCACGTTTTTGTTAACAACTCCCCTCTGCGACTATCTTCAGCTCTCCCCCTGTTACTCCTTCACACCCGCACCTCAGCGAAACCACGCCTTCATGAAGTGGCATACAGAATTGAGGGCTTACAAGAGTGGGTTTTATTTCGGCTCGCCGGAATATTTAGCTGCTCCTCCTTTTCTAACCTAGCCTTCAATACCGACTACATACCCTTTCTTCATCAACATCCCTTCCCTTCACCCTCCCAACTTCCAACAAAAACCAACCCCATCCACTTCATCGCGATGTCCATCTTCCCCCGCTCGCTTTTCATTCCGTCGCTCCCTTTCCCACCTCGGTCCGTCTTTTCCATCGTTGGAAGAAAAAAACACTCACGTAGTGAAGTGAAGTGCTTTCGTCCCTTTTTCCGCTGCAATGTTCCTCCACCTAAACAACATACAAGAGCACAGCGTCGTTTGCCTTTTACACCCACGTCGCGTGGAAGATCATCCGGCGACGACCTCACGCCAACGCCTCCTACCGGGTGCCACCTCCAACTCCTTCGCTCCGCTCACCCTCGTGTAAAACCAACCGACCCAACCCAAACCGCCCCCGAACCATCTCTTCCTCACTCCCAACTCTCTCCCcaaccccctccgccccccactcaCACACTTTTGAAGGGGCAGCAAAAACCGACGCAAGAgcaaggagagatagagagaagcgGGCCGGTTGGTATAAGACGACGGCAGCTTGACTGCTGCCTGCCTTCGCGGCCCACGCCTCTTCTTTCCCTCTCCGCCTCCTCTCCCACTGCTACGCCTCCGCCGCCTCGAAACTCCCCCGCCTCCGCCCCCGGGGCGGGATCTCGCCCAAGGAGACCTGCTCCTCCCACGGTCTCCCCACCCTACCGCTTCGTGAGGACCTGTGAGGGGAGGCCTTGCACCTCCCGCTTCTCTCTCTGCCAGACCACGCGCTCTTCGCCGAGTTGTGCGCGCGAGCTCCCCGGCCTTTCCCCCTCCGCCAAACGCCGCAGCCCCGCCGCCACGGCGCCCCAACGGGAAGAGACGTACGGGGCACCGACCGGGGGTAAAGCCGGTGCTGCCGTCGCCTCTCCGGTGTCcgggaaagggaggaggaagagtttGGCGAAGGAGTCTGCTCACTCTGGCACCGTGATCGCCGCCGTACGAAATGGTCAGTGGCGGAGGGGTCGGGCTCATCGGCCGCGACCGGCAGACGGCAGCAGCGGTGGACTCCTGCTCAGCTTCTACCGAGAAGGCAGCTGCCCGTCTCCCGCCACAGTCCTCGCCGACGCACCGCCAGAAGCGGCCCCAGCCCCGGAGGGGGCTGAATCCGTCTCACGCTGTGTGATTATGGCCGAGACGAAGCTCGAACCAAATCCCGTGGATCACGCTTCTTCAGCATTGCCTGAGCACAATACGCCTCCTTCCACGCCGCCTCTCAGCAGGACTGCGTTGGATATTAAGAGCGCAGCCGTCGTGACTACCCTCGCTAACAACAATTTGACATCGGCCGCGGTGGTCAACAATAACAACAACGAGCCTCCCAGCGCCGTTGTATTGCCCGACACCCAATCGGCCGTCGTCGGTGGGGCCAACAAGCAGCGGAAGAGGAAGCGCCTGAGTCAGGTAGTCGACAAGCTGACCGCTACTCAAGTGACCTCCGCTACCGGTTTGGTTTCCTTGAATAACAACGTTCAGAACCATCAGAACAATAATTTGCGGCGAGTTTTCAAAGAGGAGGTGGTTGAAAGTTCGGTAGTCAGTGGTGGTGGTGAAGAAGAGTGTGAAGAGGAGTTTGATGAAAGTGTTTGGAGAGGGAATGTCTCCTCTCCGCATATGTTGAGCGGGGGGCGTCAAGCGAGGGAAAGACAGTGCAAAGTTGAGGACTACGAAGAGGACTCAGAGGAGGAACAGGCGACGAAGCGACCTCCTTCGTGTGTGGACATGGCCCCGTCAGAACCCAAAGTGATGGTGGGGGCAGAGGCTCGGTCAGGGGCGCCCCCGAGGAGCCCCCTTGCCCTCACCGCGACGGGGAAGACAGGCGGTGAAGTGTTCCGTTTCGACAGTGTAGACAGGGATCGGTATCAGCAGTTATACGGTGCCATAtctgaagaagaggaggaagatgtgTTCAGTCCCGCTTCTTCCTCCAACAAGTCCCCCCACAGTTCAGCTGGTTCCCCACAGATCCCCACTACGGACTCCCCTAAAATCAGTTTCAGCCCGCTCCGCCTCAAAGACAGTAGCATAGAAGAGGAGGACGAGGACATTTCCTTAGATGGCGGAGGTAGTGAGGGCGGTTTGGAAACGCGCACCCGACCCATACACCGTAGGAGTTCCCGTCACCGCGGGTCCAGGGGCGCCGATGCCCCTGAAAATGACTGCGGGCGCAAGCCTCGTTTCCCCGGTTGCGCGTGTGTTAGATGCTCCGGTGGTCTCCCTGAAGGAGGTGACTCTTGGACGGACAGGGTGGCCGCTGCCGCTCCGGGGGGCGTTGGGGGCGGTCTTCCCGCTTCACCCGTCTCTCCGCTGACCCCTGCCGCCACCCCCGCATCTCCATCCCACATGTACGGATTCGAACATTACCTTCACACAAAATACCTCCCGGACATATTCCGTCGACGGAGTCATTCCGACTCAGATCTGCCCATGTGGTTCGAGGGTACCGTAGCGGGTGTCGGCGCTGGCGCCGGCGCCGCTGCCACTGCCCCCCGTCCCGGAAGAGGAGCCGCTCCTCACCCCCTGACGCTCTCTTCGAAAGGGGGGTCCCTCGAGTCCGAACAGTCTTCCCCTCAGGATTCACCCCTTGACCTCTCCATGAAGGGAAGCAGAGAGCTGGTCGGGAGCAGCACCACGAGTTCGGAGTCTTTATCGCCGGCGGTGGTCAAGGCGTTGTCGACCAGGATGGCTCCCGAGAATGTGTCAGCAGTGGCACCGGCCACTACCACAGTCCCAACCACCGGCTTCATCGGCAGAGGAGGCCTAGTCTCCGTGCCTGTCGTCAAGGGTGATGTGGCATCGCCAACTACCAAGGAATCAGTCGCAGTAAGGTACAACCTCGAAGTGTCCCCCGTAGTTGAAGAGATGCCCCCCGGTTCTGACGTCGCCTACGTCTGTCCCGTTTGCGGCCAAATGTTCAGCCTCCACGACAGATTGGCCAAGCACATGGCGTCGCGGCACAAGAGCCGGCAGCACCAGGCGGACGTGTCCTCCAAAGCCTACCTCTGCGACGTTTGCAAGAGGTCCTTCGCGAGGAGCGACATGCTCACGCGCCACATGAGGCTGCACACGGGGGTCAAGCCGTACACGTGTCGTGTGTGCGGCCAGGTCTTCTCGAGATCGGACCACTTGTCGACCCACCAGCGGACTCACACGGGAGAAAAACCGTACAAGTGTCCGCAGTGCCCGTACGCCGCCTGCCGGAGGGACATGATCACCCGCCACATGAGGACCCACGCGAGATACGAGGGCAAGGGTGAAGGCGTCGGCCCCGACGACCCCTCGGCATCGCCCGGCTCCGAGGAGATGACCGAGCTTCCCTCCGACCTCCCTCCCTCGCCGTCCCTCGCACTGGGCGCCCTCTCGGTTCACTCGCCGACGCCGATGGAGAATGACTGA
Protein Sequence
MDPGVLNFAQVKPFSYPLSLILLKRSFPDRPASVLAVVCPRITRTIPHLVKLPPDPTPYTHSHPTEERLPIRPIAECMGKGEWEGVEGTARKKGMVGVLPSRRGGAEEGEKVMGLGRRAVCGRAKKMVCWSVGEIEEGSSSPSLIICGQNMYILFALPLLDSSAVQTVSTPSALQFSPAGRCTYLRTRSLCDAHRQSTRMCILPLSIRLISLLSLHASPSSLSGGAPLRGGKRLACQIGGFFPDSDASDVGHRRAKEKQIGIQEIQQKSLKWIKIHVFVNNSPLRLSSALPLLLLHTRTSAKPRLHEVAYRIEGLQEWVLFRLAGIFSCSSFSNLAFNTDYIPFLHQHPFPSPSQLPTKTNPIHFIAMSIFPRSLFIPSLPFPPRSVFSIVGRKKHSRSEVKCFRPFFRCNVPPPKQHTRAQRRLPFTPTSRGRSSGDDLTPTPPTGCHLQLLRSAHPRVKPTDPTQTAPEPSLPHSQLSPQPPPPPTHTLLKGQQKPTQEQGEIERSGPVGIRRRQLDCCLPSRPTPLLSLSASSPTATPPPPRNSPASAPGAGSRPRRPAPPTVSPPYRFVRTCEGRPCTSRFSLCQTTRSSPSCARELPGLSPSAKRRSPAATAPQREETYGAPTGGKAGAAVASPVSGKGRRKSLAKESAHSGTVIAAVRNGQWRRGRAHRPRPADGSSGGLLLSFYREGSCPSPATVLADAPPEAAPAPEGAESVSRCVIMAETKLEPNPVDHASSALPEHNTPPSTPPLSRTALDIKSAAVVTTLANNNLTSAAVVNNNNNEPPSAVVLPDTQSAVVGGANKQRKRKRLSQVVDKLTATQVTSATGLVSLNNNVQNHQNNNLRRVFKEEVVESSVVSGGGEEECEEEFDESVWRGNVSSPHMLSGGRQARERQCKVEDYEEDSEEEQATKRPPSCVDMAPSEPKVMVGAEARSGAPPRSPLALTATGKTGGEVFRFDSVDRDRYQQLYGAISEEEEEDVFSPASSSNKSPHSSAGSPQIPTTDSPKISFSPLRLKDSSIEEEDEDISLDGGGSEGGLETRTRPIHRRSSRHRGSRGADAPENDCGRKPRFPGCACVRCSGGLPEGGDSWTDRVAAAAPGGVGGGLPASPVSPLTPAATPASPSHMYGFEHYLHTKYLPDIFRRRSHSDSDLPMWFEGTVAGVGAGAGAAATAPRPGRGAAPHPLTLSSKGGSLESEQSSPQDSPLDLSMKGSRELVGSSTTSSESLSPAVVKALSTRMAPENVSAVAPATTTVPTTGFIGRGGLVSVPVVKGDVASPTTKESVAVRYNLEVSPVVEEMPPGSDVAYVCPVCGQMFSLHDRLAKHMASRHKSRQHQADVSSKAYLCDVCKRSFARSDMLTRHMRLHTGVKPYTCRVCGQVFSRSDHLSTHQRTHTGEKPYKCPQCPYAACRRDMITRHMRTHARYEGKGEGVGPDDPSASPGSEEMTELPSDLPPSPSLALGALSVHSPTPMEND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-