Pnym057518.2
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- -
- Assembly
- GCA_963573305.1
- Location
- OY754330.1:117421406-117430891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1 8.8e+02 3.7 0.0 3 23 55 77 53 77 0.89 2 16 0.00013 0.11 16.0 0.7 1 23 83 106 83 106 0.96 3 16 0.13 1.1e+02 6.5 0.4 3 20 422 439 421 441 0.94 4 16 0.084 72 7.1 1.1 6 23 479 496 479 497 0.95 5 16 0.82 6.9e+02 4.0 0.4 2 22 503 522 502 522 0.92 6 16 0.059 50 7.6 1.4 3 20 557 574 555 576 0.91 7 16 4.4 3.8e+03 1.7 1.8 2 23 610 631 609 632 0.86 8 16 2.1 1.8e+03 2.7 0.2 2 22 638 657 637 657 0.91 9 16 0.00045 0.38 14.3 3.3 2 23 675 696 675 696 0.97 10 16 0.14 1.2e+02 6.4 1.1 2 20 705 723 704 723 0.94 11 16 3.8e-06 0.0032 20.8 2.3 1 23 745 767 745 767 0.97 12 16 0.48 4e+02 4.8 0.2 1 23 773 795 773 795 0.73 13 16 3.5e-06 0.0029 20.9 0.3 1 23 801 823 801 823 0.97 14 16 0.36 3e+02 5.2 0.4 1 13 856 868 856 878 0.83 15 16 0.00021 0.18 15.4 0.1 1 23 884 906 884 906 0.97 16 16 0.064 54 7.5 0.0 1 20 949 968 949 970 0.93
Sequence Information
- Coding Sequence
- ATGAGTGGCAATCCAGTTGATGAGTCGCCAATGGGAGCACCCTTGGAAGTGGCAAAGTCGGAGGAGGTGAAAGAGGTGGAGCCAGCTGATGAGTATGAGCTCACTGTGACGGAAGAGTCCCTTGTGCGTCTCCATGGACTCTCGCTCGACCTCCCAGTCCCCTGTGACTTGTGCCCTATCGGCACAGTGTTCGACGACCTGGATGAGTTTGATGCCCACATGAGCGAGCATCTCGAGGCCAAGATGTTTGCTTGCCAGCTGTGCAGCAACACGTACAGATCATGGTCCAACCTCGTGGCCCACCGCAAGATGTTCCACTTGGGTGAGGTGCTGAGCTGCGAGATTTGTGGTTCGAACAAGACCCACACAAGGCTTGAGGGTGCTGTTCACTTCCCGGTAGAAGGCAAGCCTCATGGCTGTGAGGAGTGCCAGATTGGCCTGAACACCATATCAGATGTCTATCAGCACTTCTTTCAACACAAAGCCCCCCCATGTGGCAACCGTCAGAGGCCCTGTAAACACTTGGGGCCTTATAAGAAGAGGAAAAGATCTGCTAAGGCAAAAAGTGGCATCAAAAATCAGAATATGAGTGTAGACATGAGCCGGTCATTGAAATTGAATGGTGGTTCTGTGCAATGCGGAAATCTCCCTGTTGGTACTGTCAGTGGAAATCCTTCAGGGGCTCAGAATGGAAGCATAATTAGGAGTGTGTTCTTGATTCCCAGTGGAGCTTCAATCGATAATATGCCTGGAATTAAGGGTGGGAAGCTAGTCTTGATGCCTGCTGTGATTAAAGGTGGTGGTTTAATTGGAAGTCCCCTCGGAAGTCAAAGCAAGAAAAAGTCTGTGGAGGTGACTAAGGTTAGTGGTGGGGACATAACAGTAAATCCTGTTAGTTTACAAAGTGGAGACTCAACTATTAATCAACCAGGACCTTCAAATGTGAAATTGCTTCGGGATGTCGCTGAGGTTGGGACTTGGATTGCAATCGAGAATGCTACTGAGAATGCTGTTGAGAGTCAAAGTTCACCTGTGGATTCCACCAAAACTCATGGTGAAGTCTTAAGTGGTGATAGTAATCCGGAGAAGCAAAGAGAAAACCAGAACATGGTCCTACCTGATATTCCAAGTAAAGCAATGGATACACCACCTTCTGAGGAACTTAAGAGCTGTCCTGAAAAGAGTGGCAACAAGAATCCAGCATTGAACGGAGGAAGTATACCTGAAGGAAATAAAGGATTGGTTAAAAAACCCAGGCGATTTTGTCCTCATTGCAACTCCTCATATGTAAAATTGGTGGACTATCGGAAACATGTGGTCCGTGAATCAGTTGCCCATGATTGCATCATGTGCTCTAGCTATCATCTCGAGAAATTgttgatgaaaaataatgaatactgtCCGGTCAAAACTCAGCGGTTCCTCTGCATTCCCTGTGGGACTCGCTTTAAGTCAGATGCAGAGTTTACCACGCACCTGAAGGAACATCACACTCAAGGCCCCCTTCCTTGTTGCCTATGCGGCAGGAAAATCAACTCGAGTCAGTATGTGGATCACATTAGGAGCTGCCAGCAAAAATGCATCGATTGGGAGTTTCGGAAGCAGCAGATCAGCCAAAGAATTAAACCCGAAGGAAATAATGGAGTGGTTCAAGTACCCAAGCATTTATGCCCTCATTGCAACTCCTCATACGTAAAATTGACGGACTACCGGAAACATTTGGCCCGTGAATCAGAAGCCCACAATTGTGTAATGTGCTCTATCAATCATCTCAAGAAGTTGTTAACGAAAGACCATGAATATTGTCAGCCCAATACTCAGCAGTTCTGCTGTATGCCCTGTGGGAGTCTCTTTGAGTCAGAAGCAGAGTTTACCACGCACCTGAACGAACATCACACTCACGACCCCCTTCCTTGTTGCCTATGCGGCAGGAAAGTCGACTCGATTCAGTATGTGGATCATATTAGAACCTGCCAGCAGAAATGCATTGACTGGGAGTTACAGAAGCAGCCGATCAGCAGGACATGTGACCTGTGCGGGAAGACGTTCCACTCCATCAGCTCGATACGGAAGCACTTGAAGAGGCACGAGGCCAACCGCAAGATCTCGTTGTACTGCAGGACATGCGAAAGGATGTTCCAGCACAAGGGGGCCTACTCAAAGCACCTTTGGGCCAACCCCACTCACGGCCCACCAGAGCACCGGGCCAGATTCCCAGGCACGTGCACTGACCATGTCTGCGAAAGGTGTGGCAAGACCTTCGCAAAGCGTGGTTCTCTAAAGTTGCACCTGAGGAAACACGATGGTCTGAGGCCATATGCGTGCCCGAGCTGTCCCAAATCATTTCTGAGTGGGACGGCGCTCTCATTCCATGTCCGGAGGCACACTGGCGATCGCCCATACATGTGTGAGATTTGTGGGAAAAGCTTTACGATGCTTAAGTCTTTGGTTAATCACCAGCAGGCCCACAAGGATGGGAAGAATATGGAGTTGAACAGGAGAATACGCTCCGAAAACACCAAGTCAATCATCAGGAAGATCAACAGCAATCCGAATGCCAAGAGGTACCCATGTCCATTCTGTGGCAAGATCCTCTCGTCCAAGCTGATATACGATGGTCATGTGCGGCACCATACTGGAGAGCGCCCATATCCATGTGACATATGTGGTCGGGCATTCACATTGGCAAAGGTCCTCAAGCTGCACCGCAAGGGACATGAAAAGAGTAAGACTGAGGATAAAGTTCAGTCTGTGAGCTGGGTCCACAGTGAAACTGGCTTGGAAAACAAGGGAGAGGTACACCCAGAGGGAGTTTTTGAGGACAACCCCACTGAAACTTGTGTCTACTTTTGTCCTCGGTGCGGTGTGGGTCTGGTGTCTCCAGGTGAATTGGAGGAGCACTTGGCCAAAGGTGATTGCCTCGGCGTTGGTGCAGAAACGTATTGTATTACTGTCGGCCAGTGA
- Protein Sequence
- MSGNPVDESPMGAPLEVAKSEEVKEVEPADEYELTVTEESLVRLHGLSLDLPVPCDLCPIGTVFDDLDEFDAHMSEHLEAKMFACQLCSNTYRSWSNLVAHRKMFHLGEVLSCEICGSNKTHTRLEGAVHFPVEGKPHGCEECQIGLNTISDVYQHFFQHKAPPCGNRQRPCKHLGPYKKRKRSAKAKSGIKNQNMSVDMSRSLKLNGGSVQCGNLPVGTVSGNPSGAQNGSIIRSVFLIPSGASIDNMPGIKGGKLVLMPAVIKGGGLIGSPLGSQSKKKSVEVTKVSGGDITVNPVSLQSGDSTINQPGPSNVKLLRDVAEVGTWIAIENATENAVESQSSPVDSTKTHGEVLSGDSNPEKQRENQNMVLPDIPSKAMDTPPSEELKSCPEKSGNKNPALNGGSIPEGNKGLVKKPRRFCPHCNSSYVKLVDYRKHVVRESVAHDCIMCSSYHLEKLLMKNNEYCPVKTQRFLCIPCGTRFKSDAEFTTHLKEHHTQGPLPCCLCGRKINSSQYVDHIRSCQQKCIDWEFRKQQISQRIKPEGNNGVVQVPKHLCPHCNSSYVKLTDYRKHLARESEAHNCVMCSINHLKKLLTKDHEYCQPNTQQFCCMPCGSLFESEAEFTTHLNEHHTHDPLPCCLCGRKVDSIQYVDHIRTCQQKCIDWELQKQPISRTCDLCGKTFHSISSIRKHLKRHEANRKISLYCRTCERMFQHKGAYSKHLWANPTHGPPEHRARFPGTCTDHVCERCGKTFAKRGSLKLHLRKHDGLRPYACPSCPKSFLSGTALSFHVRRHTGDRPYMCEICGKSFTMLKSLVNHQQAHKDGKNMELNRRIRSENTKSIIRKINSNPNAKRYPCPFCGKILSSKLIYDGHVRHHTGERPYPCDICGRAFTLAKVLKLHRKGHEKSKTEDKVQSVSWVHSETGLENKGEVHPEGVFEDNPTETCVYFCPRCGVGLVSPGELEEHLAKGDCLGVGAETYCITVGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -