Basic Information

Insect: Pyrrhosoma nymphula
Gene Symbol: RREB1
Assembly: GCA_963573305.1
Location: OY754330.1:91543769-91551724[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0015 1.3 12.6 0.3 1 23 223 245 223 245 0.99

2 15 7.9e-06 0.0067 19.8 0.2 1 23 272 294 272 294 0.98

3 15 2.7e-06 0.0023 21.3 2.5 1 23 300 322 300 322 0.99

4 15 0.0035 3 11.5 0.2 2 23 409 431 408 431 0.92

5 15 1.1 9.7e+02 3.6 1.3 1 23 516 539 516 539 0.87

6 15 0.14 1.2e+02 6.4 0.9 1 23 721 743 721 743 0.94

7 15 0.29 2.5e+02 5.4 2.3 1 23 761 784 761 784 0.93

8 15 0.012 9.9 9.8 3.6 1 23 790 813 790 813 0.97

9 15 0.018 15 9.3 4.9 1 23 1301 1324 1301 1324 0.95

10 15 0.0037 3.1 11.4 0.4 2 23 1667 1688 1666 1688 0.97

11 15 0.13 1.1e+02 6.5 5.2 1 23 1694 1717 1694 1717 0.97

12 15 0.0028 2.4 11.8 2.9 1 23 1774 1798 1774 1799 0.96

13 15 0.028 24 8.6 0.7 1 23 2003 2026 2003 2026 0.95

14 15 0.022 18 9.0 0.3 2 23 2094 2115 2093 2115 0.92

15 15 0.0095 8.1 10.1 4.5 1 23 2121 2143 2121 2143 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0015	1.3	12.6	0.3	1	23	223	245	223	245	0.99
2	15	7.9e-06	0.0067	19.8	0.2	1	23	272	294	272	294	0.98
3	15	2.7e-06	0.0023	21.3	2.5	1	23	300	322	300	322	0.99
4	15	0.0035	3	11.5	0.2	2	23	409	431	408	431	0.92
5	15	1.1	9.7e+02	3.6	1.3	1	23	516	539	516	539	0.87
6	15	0.14	1.2e+02	6.4	0.9	1	23	721	743	721	743	0.94
7	15	0.29	2.5e+02	5.4	2.3	1	23	761	784	761	784	0.93
8	15	0.012	9.9	9.8	3.6	1	23	790	813	790	813	0.97
9	15	0.018	15	9.3	4.9	1	23	1301	1324	1301	1324	0.95
10	15	0.0037	3.1	11.4	0.4	2	23	1667	1688	1666	1688	0.97
11	15	0.13	1.1e+02	6.5	5.2	1	23	1694	1717	1694	1717	0.97
12	15	0.0028	2.4	11.8	2.9	1	23	1774	1798	1774	1799	0.96
13	15	0.028	24	8.6	0.7	1	23	2003	2026	2003	2026	0.95
14	15	0.022	18	9.0	0.3	2	23	2094	2115	2093	2115	0.92
15	15	0.0095	8.1	10.1	4.5	1	23	2121	2143	2121	2143	0.98

Sequence Information

Coding Sequence: ATGGGCAAATTAAATGTTAACCTTTCTTCCATTCTCCGTTCTTCAGCAGAGCCCGGGTGCGAGTCGGCGCCGATAGACGaagtggaagaggagagaatggagatAACTCGAgtggagaaggaagaggataagagcGACAGCGAGAAGGCTGCCGGGGACGAAGGAGGCGCGAAGGAGGAGGCTGAGATCCCCAAAGGAGAGGCCTCGGAGTCAATGGAGCAGCAGGCTATTAAGGAGGAGGCacaggaggtggaggaggagaagaggccGCATCAAGAGGAGCAGCAGGAGGAGAGGGGTGGTCCTGTGACGAGGCAGCGGAAGGAGGATGCGGTGGCCGCAAAGCCGGCGGTCACCGCCGCCGCCGAACCAGAGTCCAACTTGATCGGTGCCAAGAAGAGAAAATCCAATAAAGTCATCAAGCGAGAGGTGGAACCCAGAGTGGAAGTCGTGACAGAGATGGTGGAGGAAGTTATCCCAGAGCCCGCTCAACCGGCAGAGccaaaagaggaagaagagacgaCGGTGGCAGAGGTGGAGCCGGACCTTTCGGCACCCGCTGCCGCTGAGGTTGAAGAGGCGGCGGAGGAACCTGTCGTGCAAATGGAGGAAGACAAGAAGGTGGACGTGAAGGCGCCCAAGGGCGACGACGAAGAGGACATGCGCTACGTGTGTCCCATCTGCGAGGACGTGCTCAGCTCCCAACATCTCTTCACCGTGCACATCAGGTCCCATAACACGCCCGGACAGACCTCCAGCGACGGCTCCGCGTCCTCCGCGGCCAATGCCTCCACCTCCAACGGCCTGAAGGCCTTCAGCTGCAGGATATGCGGGAAGGCGCtcagttcctccagttctcttgacCGCCACATGTTAGTCCACTCTGGGGAGCGTCCCTTCAAGTGTCGACTATGCGGTGTGGCATTCACGACCAACGGAAACATGCACCGCCACATGAGGACCCACGCCGCCAATCCTCAGTCCTCCAAGGAACCGGAGGAGGTCAGCGACTGCGGCAGTTCGGACAGTGGTGGTTCAAAGAGAGGGAAGGTGACGCCGAAGAAGTCACCGGCGCCGCCGCCGACGACGACTCCGTCCCCTGGTGGCGGAAGGAAGAGAGCCGCAAACGGCAGCGCAGTCGACGCCACTTCCGGCCGGCTGTCCAACAGGGGAGGGTGTTCCCCACGGACGAGAACCGCGAAGGAGGCCTCGGAGATGGGTTGGAGGTGCCTCTCGTGCGACATCTCCTTCAGAAACCAAAGAGCCTTGCGTGTCCACGCTTACATGGCACACAGGGAACTCGAGcccgaagaggaggaggaggaggacgactACGACGATGACGACTGCGAAGAGGATAGGTGCCTAGCCAGAAAGCGAACGAGGAGGTCAGGTGAAAGGGAGGACAGGGGACAGCCCAATCAAACCCCGACTCTGGGGTTCCAAGACCTGACATTCGTGGACTTCTCGACCCAGAAGTTTCCCCTGATCGCCAACGCTGCTTGCGAGAGGGCCGTCCACAGAGCCTCCAGCGAGTTCCACCGCTTCCAGTGCGGGCGATGCGACCGTGCCTTCCCGTGCGGCTCGGCACTCCACATTCACGCCGACACCCGCCATCGCGCGTCCTCCACCTCGCCGGCGACTGCGGCCCCGCCAACTGCAGACGATCCCAAAGAAGACTTCTTCGCTGTTTTGAATCTCCAGAACAAGACGAGGCAGTGCGGAACCTCTCCGACCCCCGCGAATAACCAAAGCTCCACCCCCCTACCGCACGTCAGGCTCTTCCCCCACTCGAACTCGCCTTCCCTGTCCCACTTGCCCTACGCCgagagaaagaggagggaggaagagttCGACAACGCCTTCTACTTTAACAGTCCCGCGATGAAGCCAAAAGACCTTCACTTGGGGATCAAGAAGGCCTCGAAGGGGATGGAGACAGATTCCGTTAGGGATGCCACGGATACGCCCAAAGATCTGGCGGACATACACAGCATCATATCCGCCGTCGCCGGGAACGGGTCGGAGTTCATGAGGCCtatggaagaagaggaggatgatGAAATCGAGGGAGGCGGatatgaagaagaagaggaggaacaGGAGGAAGAAGATGCAGCTTTCGCTGCGGAATTGAGGGAGATGAAGATGCGGGGGGAGTTTCCTTGCAAGCTCTGCCCTTCAGTGTTTCCCAACTTGCGCGCTCTGAAAGGCCACTGCCGGAACCACATAGCCGAAATGGTAGAGGGACAACCAGACGAAGACGAAGGGGAGAACAGATACGCGTGTTGCCTCTGCGGTCGTCGGATCGCCTCCGACAAGCACGGTCTAATGCGTCATCTCCGGTCACACAATGGAGAAAGGCCGTTCAGGTGCGCTCTCTGCCGCTACGCATTCACGACCAAGGCAAACTGCGAGAGACACCTCAGGAACAGACATTCCAAAGTATCTCGAGAAGAAGTCAGAAGGTCTGTTATCTATTCACCAGTTGCCGATGAAAGCGTTGGTGCTTTCTCTGGAGGCGACAACCTGAGGGACTTAGCGGATAAGGCAGTAAACCCGCGACAGGAGAGCGCATTTGCTTCCTCTTCCATTCAGTGTACACCGCCTAGGATGCCATCCCCGCCAACCAAGCTGTCTGCCCTCTTGACGGCGATATCCGAGGCGAAAAGCTGTCTGTCACGATCAGAACAATTCAATAAGGACCACGACAAAGACGAGAAATCCAAGTTTGGAGACAAGGATATGGAAATGAGGATCAACAACAAACATGGCGGCCACATGGATGATTTGTCCAGCGTGGAAGCGCTAGTCAATTTTGCCAAAAGTCCATCTCTTCCAGCACCCCTTACCATGGTGAGTGGACAGCTTACACTGCCTCTGCATCAGCACCTTTACCGCCCAATAGCTGTCAAGCAAGAAGTCGTAAAAGAAACTGTGACAGTGGGAGCGGAGGCCCCGTTGGACTTAAGCATGGACGCTCTTGATTTGAGCAGTAAAAAGGTGCAAGATGAACCAGAGGATCTATCTAGGCCCTCTGTTGGAAAGCTGCGAACTAATCTCCATATCCCGGCCCCGTCCTCTGTCGGAAGCTTCAATGGAGGGCTGCTGATGCCTGCGAGGTTCCCCTCCGTGCCACCAACGAGGCCTATGGCTCCACCTCCCACGACAAATAGGTCTCGACTCAGTCCCCCAATGATGAAAGTCGACCCAACCTCAGTTTCCATTTCAAACTGTGTACCAAAGATGGACATTCCAATGTCAACTCCACCTTCTCAACCGCCATTCTATTCTAATTCTCTCCACATGTACCTGAACTCGCAGTACCCCACAGGGGCCTCCACACCAACGAGGCAGCCAGTTGGGAATTTTCCATACTTACTTCCGCTCCCTTTCCCGAGCTCGGGAGCACCTCTCATAACTCAGCTACAGCCAACCCAAGTGCAGTCACCATCCCTGCACCCTTCGCCCCTAATATCTCCCTCAGTCACCCAATCTCTTTCTTCTCAAACCGTGCCATCATATCCTGGCATACCCGCGTCCTGTGCTCCGCCCTCGATGGAGCGTCTAGAAAAAGAAATTCTTCGTAACCTACAACTATCCTCTGGAGGGTCGTTAGTCCTGGACCCAGCAGCCATGAATGAACAGATACAGGCCCTGGCCATCGCAGCGGCAACCGCCGTGGGTTTTCCATCCGCTGCAACGACTTCGGAAGTTCCTCCTAAACCTATACTAACTCAAACCAAAGAATCGAAGCCAAATGATCCAGTCGGAACTACTATAAGGGAAGCCACTCCATCGAAAGAGGATAACCGAATGCAATCTGGCGTCAAGATGGTGATCAAGAACGGTGTACTCATGCCGAAACAGAAGCAGAGGAGATACAGAACCGAACGCCCATTTGCATGCTGTCACTGCTCTGCTCGTTTCACTCTGCGGTCCAACATGGAGAGGCACATTAAGCAACAGCACCCGGAATTCTGGAGCCAAAGGCCGAGAGGTGGCCGTCGAGGTGGCAGTGGCGGCCTATCCGGCGTCCCTTCGTCTAGAACTGACACTTCTCCATCAGCTTCAGACGCTAGGCTTtctcattctcctgatggaccGCTGCCCCCGGCAGCATCTCTGCCTGCCGAATCTGCCGGCAACCCCGGGAGCGAAAATGGCTCCGAAGACTATAGAGACGATGAGATGAACACGGACGATGTTGACGGCAGTGAAATGCTTTCGCCAAATGACGACCGAGTTTCTACTCCACAATCTTCAACGAATATCGACGATCCTAGTAATAAGgccaaagataataataataagaaagtgaTCTCAGAAGAGGTGAAGAACGCTATTGCTCAGCAACTCAAATCAAAACTCGTCGCCGATTGTAGAACCAACAGTAACTCATTGGAGGAGGTTGATTCAAAAAGAATAGATACCAAAGACAATGTTAGGAATCCAAATAAAGACGTCAAGGCTAAAGGTGCTGCGGAGGATGAGGACAGTGGTGAGCTGGTGATAGACGAGGAGAAGATGGACGCGGAGAACAATTCAAATGCGGACAAGGGAAAGAGCGCACTGTGTTCGGAAACCAAAGAGGATGAATCTAGTGGAGTGGATCTAGCCAGCGTGTCCAAGCTACTGGACAACGCTTCCACGCAAACGTTCCAACAGTATTTCAGGTCGGAGGAAGACGAGGAGATGGAGGAGACAGAAGGCAGGGGTTCTCGTCGCGGGGTCGACGAGGGCTACGAAGGCGGAGAGGATGGCGAAgacgaggaagaggaagaaggctgGAAGAGCGGGGACGAGACCGGGGGTAGTAAGTGCGCCTCCTCCGGGGAGGAAGGCTCCCTCAGGGGGGCCAACCGCGGAAGGGCAGACGACAGGGACGACAGCCTGGAGCGCAAGCTGGCCAACGTGACCGTGGAGGCGGCCACGGCTGCGGACACGGAGGACAAGGGAAAGCGGCGAAGCGCATACTCCTCCGCCCCTAACCGAGTCTCCTGCCCGTACTGCATGAGAAAGTTCCCCTGGCGTAGCTCACTAAGGCGCCACATACTGACGCATACCGGCCAGAAGCCTTACAAATGCGCCCACTGTCCCCTCCTGTTCACGACCAAGTCGAACTGCGACAGGCACCTCCTGAGGAAACACGGGCGTGGCAACGGCGGTGGGAGTGGCGGAAGCGGTGGGTGCGGCGGTAGCAGCAGCGGAGCGGAGGACAGCGCCTCCGTGGTCAGCTCCTCCGGTGGGGGTGGCCTCTCCCCCGGGGGAAGCGCGGCCTCCAGCGCATACACAATGCGCAATGTCCCAGAAAGGCCTTATAAATGCAGCGTCTGCCCCAGCTCCACCTTCTCCACTCAGAACAACCTGAAGAAGCACTTGGCCACCAAGCACCACCATCTACAGCCTCCGACCTCTGGGCACCATAGCGGAAGGCTGTCAGCTTCTCCACGTGGGGGTTCTGAGAAGGGTGGATCTCTGTCCTCGGCCAGCAGTCCACGCTGTGCCACGGAAGAGCGAGACGTGGATGATGAAGAAGACGAGGAGGGGCTGGTGGGTGcggaagatgaagaggaaatgctggatgaggaggaggacccggaggaggaagaggaagagggggagtTCGAGGAGGATGAAGAATCTGCCGACTGCAGTGTGGGAGACGTGGTTTGCAATGGTGAGGCACACAGTCTCCGCAGCCAGAGTAACTCGATCAAGAAGAAGGACCCAGTGCCTCCTCAACCTATCCCAAAGACTCAAGAAAAAGCCCCAGAGCAGCTGTTTTCCCCAAACCAAAATAAGCACCAGCACTTAAATGGGAATCTGCCTGTGGCTTCAGCAGATGAAGGAGAGCAGGTCAAGCCGGCATGGGATAAAGGTCGGACGCCACCTCTTGTCATCCCTGTTTTACCAAGTCACCCAGTCCAGCTGCCAACTCACCACCAACAGCAGCAGCACCACCACCATCATCACCACCATCACCATCCAGGTTCTGACCTCCCTTTCAAGTGCCATCTATGTGAGCGCAGCTACGCCGAGCGAAACGATGCCTTGAACCACATTAAGGATGCTCACACCTCTGAATATGAGCTCCTTGTGGCCAAAGGAGCACTAGACTCAGCCAACACAGTCTCATCTGAGGATGCCCACAACAACAATCACCACAATGGTccaaacaacaacaacaacaacgtTGCTGGGGCTGACCAGGCTGGTGGAGAGGAGAGCCTAGAACAACTGAGGGGAAAGTTCCCTGATTATGCAAACAGAAAGGTGGTTTGTGCATTCTGCATCCGTCGTTTCTGGTCAGCAGAAGATCTTCGACGTCACATGCGCACGCATACTGGTGAACGTCCCTTCTCTTGTGACATCTGCGCAAGACGCTTCACTCTCAAGCACAGCATGCTTCGTCACCGCAAGAAGCACTCAAATGCAGAGAGGAATGCAGCAGGTGGAAACAATCCCATCGTGGTCGCGACATCCGAGGCCAGTGATGAGGAGGCTATCACCACGCGGCACAGGGCCATGGCTGGCGATTTGGTTGCAATAAGCCACTTGAAATGGGAGAAGAATGTGCACGGTGGGAAAGATGATGATGAGGCTGAGGGGAAACGAAGGAAACTCATCCCTCAGGAACTAAATCTTGCAGCTGCTATAGGTGGAGCAGCTGGAGCTGGTGACTTGATAGAAAAGCTGTTGGATATAAAGGATAAGTCCATAATCGAAAAGATGCTTAATTCAAAGTCTGCTGATGACGCAGCGAAACTTTTAGGGGTCGACGGTCATGACTGA
Protein Sequence: MGKLNVNLSSILRSSAEPGCESAPIDEVEEERMEITRVEKEEDKSDSEKAAGDEGGAKEEAEIPKGEASESMEQQAIKEEAQEVEEEKRPHQEEQQEERGGPVTRQRKEDAVAAKPAVTAAAEPESNLIGAKKRKSNKVIKREVEPRVEVVTEMVEEVIPEPAQPAEPKEEEETTVAEVEPDLSAPAAAEVEEAAEEPVVQMEEDKKVDVKAPKGDDEEDMRYVCPICEDVLSSQHLFTVHIRSHNTPGQTSSDGSASSAANASTSNGLKAFSCRICGKALSSSSSLDRHMLVHSGERPFKCRLCGVAFTTNGNMHRHMRTHAANPQSSKEPEEVSDCGSSDSGGSKRGKVTPKKSPAPPPTTTPSPGGGRKRAANGSAVDATSGRLSNRGGCSPRTRTAKEASEMGWRCLSCDISFRNQRALRVHAYMAHRELEPEEEEEEDDYDDDDCEEDRCLARKRTRRSGEREDRGQPNQTPTLGFQDLTFVDFSTQKFPLIANAACERAVHRASSEFHRFQCGRCDRAFPCGSALHIHADTRHRASSTSPATAAPPTADDPKEDFFAVLNLQNKTRQCGTSPTPANNQSSTPLPHVRLFPHSNSPSLSHLPYAERKRREEEFDNAFYFNSPAMKPKDLHLGIKKASKGMETDSVRDATDTPKDLADIHSIISAVAGNGSEFMRPMEEEEDDEIEGGGYEEEEEEQEEEDAAFAAELREMKMRGEFPCKLCPSVFPNLRALKGHCRNHIAEMVEGQPDEDEGENRYACCLCGRRIASDKHGLMRHLRSHNGERPFRCALCRYAFTTKANCERHLRNRHSKVSREEVRRSVIYSPVADESVGAFSGGDNLRDLADKAVNPRQESAFASSSIQCTPPRMPSPPTKLSALLTAISEAKSCLSRSEQFNKDHDKDEKSKFGDKDMEMRINNKHGGHMDDLSSVEALVNFAKSPSLPAPLTMVSGQLTLPLHQHLYRPIAVKQEVVKETVTVGAEAPLDLSMDALDLSSKKVQDEPEDLSRPSVGKLRTNLHIPAPSSVGSFNGGLLMPARFPSVPPTRPMAPPPTTNRSRLSPPMMKVDPTSVSISNCVPKMDIPMSTPPSQPPFYSNSLHMYLNSQYPTGASTPTRQPVGNFPYLLPLPFPSSGAPLITQLQPTQVQSPSLHPSPLISPSVTQSLSSQTVPSYPGIPASCAPPSMERLEKEILRNLQLSSGGSLVLDPAAMNEQIQALAIAAATAVGFPSAATTSEVPPKPILTQTKESKPNDPVGTTIREATPSKEDNRMQSGVKMVIKNGVLMPKQKQRRYRTERPFACCHCSARFTLRSNMERHIKQQHPEFWSQRPRGGRRGGSGGLSGVPSSRTDTSPSASDARLSHSPDGPLPPAASLPAESAGNPGSENGSEDYRDDEMNTDDVDGSEMLSPNDDRVSTPQSSTNIDDPSNKAKDNNNKKVISEEVKNAIAQQLKSKLVADCRTNSNSLEEVDSKRIDTKDNVRNPNKDVKAKGAAEDEDSGELVIDEEKMDAENNSNADKGKSALCSETKEDESSGVDLASVSKLLDNASTQTFQQYFRSEEDEEMEETEGRGSRRGVDEGYEGGEDGEDEEEEEGWKSGDETGGSKCASSGEEGSLRGANRGRADDRDDSLERKLANVTVEAATAADTEDKGKRRSAYSSAPNRVSCPYCMRKFPWRSSLRRHILTHTGQKPYKCAHCPLLFTTKSNCDRHLLRKHGRGNGGGSGGSGGCGGSSSGAEDSASVVSSSGGGGLSPGGSAASSAYTMRNVPERPYKCSVCPSSTFSTQNNLKKHLATKHHHLQPPTSGHHSGRLSASPRGGSEKGGSLSSASSPRCATEERDVDDEEDEEGLVGAEDEEEMLDEEEDPEEEEEEGEFEEDEESADCSVGDVVCNGEAHSLRSQSNSIKKKDPVPPQPIPKTQEKAPEQLFSPNQNKHQHLNGNLPVASADEGEQVKPAWDKGRTPPLVIPVLPSHPVQLPTHHQQQQHHHHHHHHHHPGSDLPFKCHLCERSYAERNDALNHIKDAHTSEYELLVAKGALDSANTVSSEDAHNNNHHNGPNNNNNNVAGADQAGGEESLEQLRGKFPDYANRKVVCAFCIRRFWSAEDLRRHMRTHTGERPFSCDICARRFTLKHSMLRHRKKHSNAERNAAGGNNPIVVATSEASDEEAITTRHRAMAGDLVAISHLKWEKNVHGGKDDDEAEGKRRKLIPQELNLAAAIGGAAGAGDLIEKLLDIKDKSIIEKMLNSKSADDAAKLLGVDGHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00261406;
90% Identity: -
80% Identity: -