Basic Information

Insect: Pyrrhosoma nymphula
Gene Symbol: -
Assembly: GCA_963573305.1
Location: OY754328.1:80954339-80955751[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.002 1.7 12.3 0.9 2 23 3 25 2 25 0.95

2 14 0.0055 4.7 10.9 2.4 1 23 30 52 30 53 0.92

3 14 3.3e-06 0.0028 21.0 2.4 1 23 57 79 57 79 0.98

4 14 0.00024 0.21 15.1 1.7 1 20 85 104 85 106 0.93

5 14 1.2e-05 0.011 19.2 0.8 2 23 112 133 111 133 0.97

6 14 0.0012 0.98 13.0 0.1 1 23 139 161 139 161 0.96

7 14 1.6e-06 0.0014 22.0 0.2 1 23 166 188 166 188 0.98

8 14 0.0014 1.2 12.7 0.0 3 23 192 212 191 212 0.97

9 14 2.7e-05 0.023 18.1 0.3 1 20 228 247 228 250 0.94

10 14 3.6e-07 0.0003 24.1 3.7 1 23 256 278 256 278 0.98

11 14 0.83 7e+02 4.0 5.9 1 23 284 306 284 306 0.97

12 14 0.0036 3.1 11.4 0.2 1 23 312 334 312 334 0.95

13 14 2.3e-06 0.0019 21.5 3.0 1 23 344 366 344 366 0.98

14 14 0.0075 6.4 10.4 4.0 1 20 372 391 372 393 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.002	1.7	12.3	0.9	2	23	3	25	2	25	0.95
2	14	0.0055	4.7	10.9	2.4	1	23	30	52	30	53	0.92
3	14	3.3e-06	0.0028	21.0	2.4	1	23	57	79	57	79	0.98
4	14	0.00024	0.21	15.1	1.7	1	20	85	104	85	106	0.93
5	14	1.2e-05	0.011	19.2	0.8	2	23	112	133	111	133	0.97
6	14	0.0012	0.98	13.0	0.1	1	23	139	161	139	161	0.96
7	14	1.6e-06	0.0014	22.0	0.2	1	23	166	188	166	188	0.98
8	14	0.0014	1.2	12.7	0.0	3	23	192	212	191	212	0.97
9	14	2.7e-05	0.023	18.1	0.3	1	20	228	247	228	250	0.94
10	14	3.6e-07	0.0003	24.1	3.7	1	23	256	278	256	278	0.98
11	14	0.83	7e+02	4.0	5.9	1	23	284	306	284	306	0.97
12	14	0.0036	3.1	11.4	0.2	1	23	312	334	312	334	0.95
13	14	2.3e-06	0.0019	21.5	3.0	1	23	344	366	344	366	0.98
14	14	0.0075	6.4	10.4	4.0	1	20	372	391	372	393	0.94

Sequence Information

Coding Sequence: ATGCAAAAGTGTGAAATCTGCAATTCATGTTTTCACGGTGCAGCCAATTTGGAGAGCCACCTGGAAGTGGTTCACAAAAAGAAAAGACATCAGTGCCGAGTTTGCGAAAAAAAGTTTATCTCAGTTGAACTTTTAAGGGAGCATAAGGTTGAACATCATAAAACTGAGCACAAGTGCGAGTCATGTGGGAAAACTTTCCCTACCGCAAAGAAGTTGAAAAACCATGCCCAAACTCATTCTTCAGAGCGGAACTACCTCTGTGAGAAGTGTGGCAAGGATTTCAAGTTGAATTCGAGTTTGCACAAACACCGTTACTTGTGTCAGGTCACCGTGTCGTGTAATATATGTGACCGTAAATTTGACAGCACTACACGGCTGAAGATTCATATGAGGATCCACACGGGCGAGAAACCATATGTGTGTGCAGTATGTGGGAAAGGTTTCCACGCAACTTGGGCCCTGAACCAGCATATGGTGCTACATGATGCTATCAAATTCCCATGTCCGATATGCGGCACTCTCTTCAACAGAAAGGCAAATATGGTGACGCACATGATGCGTCACCGCGTTGCCTGTGATACATGTGGCCAGATGTTTGCCAACACTCCTGTCCTGCAGGCACACCTAAAGGAGCATGTGGAGAATGGTGAGAGGGCAGATGATATTGTGCCATCCAAGAGCTACAAATGCAGCGATTGCGGGAAGCTGTTTGTTACCTCTCTTGACCTTAAGGCTCACCTACCCAGCCACTCTGATGCGACCCCCCACCAGTGTAATCTATGCGAGAAGAGTTTCAGGCGTTTGAAAGCCCTGAGGAAACATATGTTGACGCATAGCGGTCGCAAGCCTTATCAGTGCCGCTTCTGCACCTGCACTTTTGTTGTCCATCAAAGGTTGTTGAAACATGAGAAAGGTCATACAGTGGGTAAACCATATGTGTGCCAAGTGTGTGGCCAAGGATTTTGGTCTCCCCTAAACCTTGAGAAGCATTCATTTAGGCACTGTGCAAGTAGTTCAACAGAACAAATATACCATTGCAATTactgtgaaaaatcattcgccgtgAAATCCTCCTTACTCATACACAAACGCACTCATACATCTCAGCTTACTTATAGTTGTTCATTTTGCCCCCGAAAGTTTTCACGGCTGAAGTTCATGCAAAGACATAAGTGTGCCCTAAATCCAAATCCAGAAGGTAGTGATTCATCTCTACAAAAAGGCATACTTCCATCATTGCCTATATTAACTGATGGGTCTGCTGAAGGTGGTGATAACATCTTCCCAGTTAGtgttttaaatgaagaaattgtGTATGATATGGAGTCCTCAGCATCTTATGCAGAAATTATTGTGATTTCTCAAAATATAGACGAGTTTATAGGTGAAGATGACAGtgaattgaatgaataa
Protein Sequence: MQKCEICNSCFHGAANLESHLEVVHKKKRHQCRVCEKKFISVELLREHKVEHHKTEHKCESCGKTFPTAKKLKNHAQTHSSERNYLCEKCGKDFKLNSSLHKHRYLCQVTVSCNICDRKFDSTTRLKIHMRIHTGEKPYVCAVCGKGFHATWALNQHMVLHDAIKFPCPICGTLFNRKANMVTHMMRHRVACDTCGQMFANTPVLQAHLKEHVENGERADDIVPSKSYKCSDCGKLFVTSLDLKAHLPSHSDATPHQCNLCEKSFRRLKALRKHMLTHSGRKPYQCRFCTCTFVVHQRLLKHEKGHTVGKPYVCQVCGQGFWSPLNLEKHSFRHCASSSTEQIYHCNYCEKSFAVKSSLLIHKRTHTSQLTYSCSFCPRKFSRLKFMQRHKCALNPNPEGSDSSLQKGILPSLPILTDGSAEGGDNIFPVSVLNEEIVYDMESSASYAEIIVISQNIDEFIGEDDSELNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -