Basic Information

Insect: Pyrrhosoma nymphula
Gene Symbol: -
Assembly: GCA_963573305.1
Location: OY754340.1:28652469-28693385[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00016 0.14 15.7 0.3 1 23 734 757 734 757 0.98

2 15 0.00029 0.24 14.9 4.3 1 21 760 780 760 783 0.96

3 15 7e-06 0.0059 20.0 2.9 1 23 789 811 789 811 0.97

4 15 2.5e-05 0.021 18.3 0.8 1 23 819 842 819 842 0.92

5 15 3.9e-05 0.033 17.6 0.6 1 23 848 871 848 871 0.98

6 15 9.5e-08 8.1e-05 25.9 3.9 1 23 877 899 877 899 0.98

7 15 0.064 54 7.5 7.6 1 23 905 927 905 927 0.96

8 15 0.002 1.7 12.2 0.4 2 23 933 954 932 954 0.97

9 15 5.4e-07 0.00046 23.5 0.7 1 23 960 982 960 982 0.98

10 15 3.4e-06 0.0029 21.0 3.4 1 23 988 1010 988 1010 0.98

11 15 0.012 10 9.8 0.2 1 23 1016 1038 1016 1038 0.96

12 15 0.059 50 7.6 0.1 2 23 1045 1066 1044 1066 0.91

13 15 0.0019 1.6 12.3 2.9 1 21 1075 1095 1075 1097 0.95

14 15 2e-06 0.0017 21.7 0.5 1 23 1103 1125 1103 1125 0.97

15 15 0.004 3.4 11.3 3.3 1 23 1131 1154 1131 1154 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00016	0.14	15.7	0.3	1	23	734	757	734	757	0.98
2	15	0.00029	0.24	14.9	4.3	1	21	760	780	760	783	0.96
3	15	7e-06	0.0059	20.0	2.9	1	23	789	811	789	811	0.97
4	15	2.5e-05	0.021	18.3	0.8	1	23	819	842	819	842	0.92
5	15	3.9e-05	0.033	17.6	0.6	1	23	848	871	848	871	0.98
6	15	9.5e-08	8.1e-05	25.9	3.9	1	23	877	899	877	899	0.98
7	15	0.064	54	7.5	7.6	1	23	905	927	905	927	0.96
8	15	0.002	1.7	12.2	0.4	2	23	933	954	932	954	0.97
9	15	5.4e-07	0.00046	23.5	0.7	1	23	960	982	960	982	0.98
10	15	3.4e-06	0.0029	21.0	3.4	1	23	988	1010	988	1010	0.98
11	15	0.012	10	9.8	0.2	1	23	1016	1038	1016	1038	0.96
12	15	0.059	50	7.6	0.1	2	23	1045	1066	1044	1066	0.91
13	15	0.0019	1.6	12.3	2.9	1	21	1075	1095	1075	1097	0.95
14	15	2e-06	0.0017	21.7	0.5	1	23	1103	1125	1103	1125	0.97
15	15	0.004	3.4	11.3	3.3	1	23	1131	1154	1131	1154	0.98

Sequence Information

Coding Sequence: ATGGGGTGCCTTGTAGGCCAGCTGTTCTACAGGGGCTTCATGTGTTGGAAACACTTTCGGGTCGAAGACTTCCAAACTCCTGCCTGTCAGAAGCTGAACCGGAATGCTGCACCTGCcctgcatcctcctttctcatctcCTGCTGTCACCTTTTCATCCCCTACTTCTTGTCACAATCATTCACCACCTCATCACTCATCATCTCTCCTAAATGGATCATCATCTTCCTTAGTGGTTACCTCAACTCCTGGCACCTCAGACCCCCATCGGTTATCTATAGATTTAACCCCTGTATCTGCCTCTCCCAGTACCTTTGATAATGTTGCTGATGGCCCAGTTATTGGTTCCAATTGTCAAAAACGTGTGCTGGAAGAGGAAAGGCCTTCCCTTGATAAGTCTTCAACTTCTTCCACGGTCTTACAGCCTTCCCTTTCTGCAGATATACCTGGTTGCAATGAGCCTCTCACCTGCAACAAGggaatggaggagagggacaGGCACTGCTGTCTTCTATTCGACGAGATGTCGTTGAAGCCCGGTTTGACTTATGACAGGTTGAGGGATCAAATAGTAGGCTTCGAAGACCATGGCACCATAGGGACTACTAATGCTTTGGCAAAGGTAGCTATGGTGTTCATGGCTCATGGCCTTTTCTCAGCCTGGAAGCAGCCGCTGGCCTACTACTTCAGCTCCTCTGCCACGCCATCCTCAACATTAAGTGAGCTGCTGAAGGAAGTGCTTCGGAACCTACAGCAGATTGGGTTAAATGTAGTAGCCACTGTTTGTGATATGGGCACTAACAATGTTCGAGCCCTTCAACTTATGGGGGCATCCTTTGAGGATCCTTCCTTTGAGTTTGAAGGGCATACAGTGGTTACTATATTTGACCCCCCTCATTTACTGAAATGCTTCCGTAACCTTTTCATCAAGCATGATGTTAGGGTTCCGGTGGCATTAGCTGGTAATGAGGTGCTGTTACAGGCATCGTGGGACCATATTCAATTGTTCCCTCTCACTGAGAGACACATGAACCCGAAAGGATTCGACAAAATGAGGGTTTTTCTGGCTGCCCAAGTGTTTAGTCTCCGTGTCGGGCGAAGATTGGGGGCATTGGTGGCAAGAGgagCTCTTGGAAGCAATGGTCTCGCCACTGCTGAGTTCCTTATTGCCATCAATGACCTATTCGATGCATTAAATGGCGACACGGAGAGtaagcagagaatgaagaagctGGGCCCGATGACAAAAAGGAGTGGCCATCTAGAACTCCTAAGGAAGGTGGAGAAATTCCTACAGGGGATGGAGTTTGTGAGGGAGAGAGGCAATTCATTCCCTCCCTCTCAAAAGGGTTGGCTGGCTACAATAAGGGGTGTCTCCCAGCTATGGGCATCCCTTCAGGGTAGCTGCAGCCGGGAGCTGCAGTCAGCTGCATTTATTGCAGGGTATGTAGCCAAGGCAGCTCTTCAGGGTAGCAGTTGCGGACTCTGCCAGGGTAGTCTAATCTCCAGGGATCCTTCCAGCAATGACCTCTTCTTTGTCCTTGATGGGGAAGAGGGTGAAGGGTGCCCTTCGGAAGGTCTGACTACCCTGGGCACCATCAAAGTGGAGAAGAGTGATGTCGACAACCAGGATGACGGTGATACCTCTGGCAGCAGTGACGAGGGCGAGGGGGACTTGTCGGATGAGAGGGAACCCGAGGTCCGTGTGAAGAAAGAGCCCGAAGTAGACGATGATACAAATGGAAGTGCTGACAGTGGTGACGAGAACTCGGAGGATGGTGGGAACGAATTGGATGGCGATGGAACCCAATCTGAGGTCCGTGTGAAGACAGAGCTGGGTGAAGTGGACGATAATACAAATGGAAGTGCTGACGGTGGTGGCGAGAACTCCGGGGATGATGGGAACAAATCGGATGGCGATGGAATCCAATCTGAGGCGTCCGATATGAGTGTTTCGGAAGATGAGTGGGTGCCTGATGGCAAGGAAGCAAAGAGACTCAAGCGGAAGAATGTGGAGACTGGAAGAGGGACGAGACAGTCAGCTGGGCATCGCGGTGAATCAGAGTCCATGACCTCGGGCAAACGCCGAATATTGGAGCCAGATGCTCCTATAGAGAAAGGGAGTATTTCAAAAGCTTGGGACACCTCCGATTCATCTGGCACCTCAGAAGGAGAGGCTGGTGTGCCTGAACGAACTCTGTTCGAGTGTGAGGATTGCCGAGAGCAGTTTCCCAGTCGGAGAGTTTTGAAGGTGCACATCCGAAAAGAGCACACGTCTTTCGTGTGCGATATCTGCAAGAAGGTCTGCACGCAGAAGGTACACCTAATTAGTCACATCAGATGCGTCCACCTTAAGGTCCGCGACCATCCTTGTGGTGTGTGCGGGAAGATGTTCAGTCTCAAGCATACTCTCAGACTTCACATGAACACGCATCGGAAGGAGAAGGTGAAGCCGCACAAGTGTGAAAAATGCGGGAAAGGGTTCGTCACGAACCGGTCCTTGAAGCTTCACGTCGAGGGCGTCCACGAGAAAGTGAGAGCTTACAAGTGCAAACTTTGCACGAGGGAGTTTGCGCAGAAGGTCAATCTGGATTCGCACGTCCAAACCATCCACGTAGCGGATAGAAAGTTTTCCTGTAAACAGTGCCCGAAAACCTTCAAGAGAGCGGATCATCTCAAATCGCACATGATGACTCACACTGGCGTTAGACCGCATGCGTGTGAACTCTGTCACAAGACATTCCACTGGCCGAATCATCTGAAGACGCACATGGAACGTCACAGTGGCAAGAAGCTCGTTTGTTCGTTCTGCTCGAAGGAGTTCCTGGATTCATCTCGCCTGCAGGCACACCTTAGGGTTCATTCGGACGAGCGACCTCACAAGTGCGAGGAGTGCCCCAAGGCTTTCAAAGTCAAGTCCGATCTGACGCTTCACATGCTCGTTCACTCTGGGTTGAGGCCCCATGAGTGCACGGTCTGCGGGAAGGCGTTCTCGCTCAAGTGCAACCTGTTGGTTCACATGCGAAAGCACAAGGGGGAGAAGAAGTTCGACTGCGACATTTGCTCGAGGTCGTTCTCGGCAAAGGCCATTCTCGATAACCACTTACTGACGCACTCTAATGAGAAGCGAATCCAGTGCGAAGAGTGTGGGAAGTGGTTGAAGAACGAGAGGAGTCTCCGTAATCACGCCGTGCTGCACACGTCGGCTAGGGACAAGAAACCGTTCAAGTGCGAGGTTTGTTCGAAGTCGTTCCGACTCAAGGCGGTCCTCAGGTCGCACATGTCCTGCCACACTGGTTTGAAGCCCCACGTCTGCGAGGTTTGCTCGAAAGCGTTCTCGTCGATGTCGAACCTCAAGGTGCACATGGATATTCACACGGTGGGGAAAGCATTCAAGTGCGACAAGTGCGACTTCACCACTGCCAACAAATACTACGTGAGGATTCACAAGAAGACTAAGCATGGGGATGAAGAGCACGGCAGTGATTCGGGTGGAACTTCTTCTGGTGAAGATTCGTGA
Protein Sequence: MGCLVGQLFYRGFMCWKHFRVEDFQTPACQKLNRNAAPALHPPFSSPAVTFSSPTSCHNHSPPHHSSSLLNGSSSSLVVTSTPGTSDPHRLSIDLTPVSASPSTFDNVADGPVIGSNCQKRVLEEERPSLDKSSTSSTVLQPSLSADIPGCNEPLTCNKGMEERDRHCCLLFDEMSLKPGLTYDRLRDQIVGFEDHGTIGTTNALAKVAMVFMAHGLFSAWKQPLAYYFSSSATPSSTLSELLKEVLRNLQQIGLNVVATVCDMGTNNVRALQLMGASFEDPSFEFEGHTVVTIFDPPHLLKCFRNLFIKHDVRVPVALAGNEVLLQASWDHIQLFPLTERHMNPKGFDKMRVFLAAQVFSLRVGRRLGALVARGALGSNGLATAEFLIAINDLFDALNGDTESKQRMKKLGPMTKRSGHLELLRKVEKFLQGMEFVRERGNSFPPSQKGWLATIRGVSQLWASLQGSCSRELQSAAFIAGYVAKAALQGSSCGLCQGSLISRDPSSNDLFFVLDGEEGEGCPSEGLTTLGTIKVEKSDVDNQDDGDTSGSSDEGEGDLSDEREPEVRVKKEPEVDDDTNGSADSGDENSEDGGNELDGDGTQSEVRVKTELGEVDDNTNGSADGGGENSGDDGNKSDGDGIQSEASDMSVSEDEWVPDGKEAKRLKRKNVETGRGTRQSAGHRGESESMTSGKRRILEPDAPIEKGSISKAWDTSDSSGTSEGEAGVPERTLFECEDCREQFPSRRVLKVHIRKEHTSFVCDICKKVCTQKVHLISHIRCVHLKVRDHPCGVCGKMFSLKHTLRLHMNTHRKEKVKPHKCEKCGKGFVTNRSLKLHVEGVHEKVRAYKCKLCTREFAQKVNLDSHVQTIHVADRKFSCKQCPKTFKRADHLKSHMMTHTGVRPHACELCHKTFHWPNHLKTHMERHSGKKLVCSFCSKEFLDSSRLQAHLRVHSDERPHKCEECPKAFKVKSDLTLHMLVHSGLRPHECTVCGKAFSLKCNLLVHMRKHKGEKKFDCDICSRSFSAKAILDNHLLTHSNEKRIQCEECGKWLKNERSLRNHAVLHTSARDKKPFKCEVCSKSFRLKAVLRSHMSCHTGLKPHVCEVCSKAFSSMSNLKVHMDIHTVGKAFKCDKCDFTTANKYYVRIHKKTKHGDEEHGSDSGGTSSGEDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -