Pnym000090.1
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- -
- Assembly
- GCA_963573305.1
- Location
- CAUYRF010000002.1:221052-265065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.8e-06 0.0041 20.5 0.1 1 23 579 601 579 601 0.97 2 15 0.00028 0.24 14.9 0.1 1 23 626 649 626 649 0.98 3 15 2.9e-05 0.024 18.1 4.2 1 21 652 672 652 675 0.96 4 15 9.6e-06 0.0081 19.5 0.2 1 23 681 704 681 704 0.95 5 15 3.2e-07 0.00028 24.2 0.8 1 23 710 733 710 733 0.98 6 15 2.7e-06 0.0023 21.3 3.3 1 23 739 761 739 761 0.98 7 15 8.4e-05 0.071 16.6 0.4 1 23 767 789 767 789 0.97 8 15 0.002 1.7 12.2 1.1 1 23 794 816 794 816 0.97 9 15 4.4e-06 0.0037 20.6 3.6 1 23 822 844 822 844 0.98 10 15 1.5e-05 0.013 18.9 0.3 3 23 852 872 851 872 0.98 11 15 0.012 9.8 9.9 1.1 3 23 880 900 878 900 0.98 12 15 0.027 23 8.7 1.6 1 23 906 928 906 928 0.91 13 15 0.002 1.7 12.2 4.9 1 21 937 957 937 959 0.95 14 15 7.7e-06 0.0065 19.9 0.1 1 23 965 987 965 987 0.98 15 15 0.0013 1.1 12.8 2.7 1 23 993 1016 993 1016 0.98
Sequence Information
- Coding Sequence
- ATGATGACATTTCCTTTGCAGTCGAACTTGGTACCCAGCTCTCCAACATGGCCATTACCGGAGACAACAGAGGCTTTCCGAAAGAGACTGAGCAGTCGAACCAGCAggaaggacagcgatgaagtggaaggGTTCGTGGAAGAGGAAATTCCAGTGGTGTCTGAAGATGAGGATCCCCTCCAGTCGGTCACAGTTGTGAGAAGGGAAGAAGATGATGGGGCGAAGtgGGTCTTGGCACCTGGGCTCCCTACACCACCCTCCCAAGAAGCAACAAAGGTCATTCAGAAGGGACCAAGCAGTCTAGTCAACTggaaggacagcgatgaagtggaagtTGTTGAGACATTGAAAGAGGAATCTCCAGTTACATCTTGCCATGAGGATCCTTTGCGGGAGGTCACCGTCtcaagaaaggaaaggaaaaggggtCACGGGGGGAAGGTAACCTTAAAGGATGACGTTGATGGAAATGAATCCATCTCAGATGCAGATACTTGCGGTCAGGAGATCCATTGGAAGGTTGGATCTGCGTGCACGGGAGTTTTCAATGATGCAGCTTTGGCTGATCCCTTAGCTATGACTGATAAAAAAGAAGATGCAGTTGCAGGTGAATCGTCGTCAGAAGCAGTGACTTACAATCAGATTGACCTTCAAGAAAATGACACCTTGGACGCTGGTGCATCAACTGTTGTGTGCTTACCAATTGTAATGGGAAAACTGTGTGGTGCTAAGGAAGAGGATAACTCTAGTGAATCTCTGGCTGGGGAAGGGGCTCTGGGAGTGGAGGACATTGCTGAGGATGAGTCAAGACTAACATCAGTCACTAGCGTCATATCTGTGCCACAACCTGTGGGAAATGTGGACACTGTCAAAGTAAAGGAAAGTGTTGTCGACAACCAGGATGACGTACACCGACGTACACTGGCCTTTGGCAGTGGTGACGAAGGCGATGGGGACTTACCGGTAAAGAGTGAATCTGAGGTCCATGTGAAGACAAGGCGGGATGAATTGGACGACGAGGCTAATGAAATTGAATCTGGTACCAGTGATGATGAGAACTTGGGGGATAATGGGAACGAATCGGATGGCGATGGCATCGAATCTAAGGTGACTGATGTGAGTCTTTCCGATGACGAGTGGGTGCCAGACCGCAAGGAAGCGAGTAGACTCAAGAGGAAGAATTTTGAGATTGGAAGGGGGAAGAGACAGTCCGCTGAGCATCGCTGTGAATCGGAAGCTCGTCCAAGTCCTGTTTTAATGACTCAACCGCGGCCTCTACGGGTTGAGCGACTGACGAAAGCGGTAGAGAGTTCCAGGGACTGCTTCCGCTGCACTTCTGATCCACTTCTTTTGGCGTCTTCATCTAGAAGCCTGCTTTTGTCGAAGGACAGGGTCAGGTTTTCCTGGGACATAGTCCCTATGGCAGTAACCACCGTTTGTAGTCGTCCGGAATTGTCAGCAAAAGATGACACACAATGTGTATTTCGACTTGAGTCCAAGACCTCGAATAAACGTCGAAGATTTGGGCCACGTACTCTTTTGGACGGAGACAGTATTTTAAACGCTGTTAACAACTCCGATTCATCTGGGACCTCAAGAAGAGAGGCTGGTGTGGATACGCCCGAACGAATGGACGCAGAAGGGAAGGAGATGGTGAGGAAGAGGAACGCCGTAGCAGAGGGCAGTTCTTCTGCCAAGGGATTCAGGAAGGAGGGAGAGCCAGAGGTGGCAGATTACAAGTGCAGTGAGTGTGGGGAGGTTTTCAGTTCTAGAGGATTGTTGGCGAATCACGAGAAAGATCACTTCAGTAAGAATTCGAATAAGGGTCGGAGTGAGAGacatagaaggaagaagaatgatGCCGATGGAATTCTATTTCAGTGCGAGGATTGCGGAGAGCAGTTACCAAGTCAGGGAGTTTTGAACGCGCATATCAAAAAAAAGCATATGTTTTTCGTATGCGACATCTGCAATAAGGTCTGTAAGCAGAAGATGAACCTCAATCGTCACATCAGATGTGTCCACCTTAAAAACCGTGACTATCTTTGTGGGGTATGCGGGAAAAGGTTTGTCTCTAACCAGAGCTTAAAGATGCACATCGAGACCGTCCACGAAAAAGTGAAAGCTTACAAGTGCGACATTTGCTGGAAGGAGTTTTCGCGGAAGAAAAATCTGAATTTGCACGTCCAAACCATCCATGTCACGGATACAAAGTTTTCCTGCAAATTATGCTCGAGAACCTTCAAGAGAGCAGATTATATCAAAAAGCACATGAGGACTCACACTGGTGTTCGTCCGTATGCTTGCGAAATCTGCCCTGAGAAATTCCGTTGGGCGAGTGATTTAAAGAGGCACATGGAACATCACAGTGAAAAGAAACACGTTTGTTCAATCTGCTCTAAGCAGTTCCTGGATTCGTCAGTCCTACGGAAACATCTTCTGGTTCACTCGAACGAACGACCTCACCAGTGCAAGGAGTGCCCCAAGGCTTTTAAAATCAAGCACCAACTGATGCGTCACATGCTAATTCACTCTGAGTTGAAGCTTCACGGATGCGCAGTCTGCGGGAAGTATTTCTCTCTAAGGAGCAACATGGTGCGTCATATGCGAATCCATAAGGGGGAGAAGAGCTTCGGTTGTCACATTTGCTCGATGAAATTCTTGGTAAAGGCCTCCCTTCAGAATCACATCCTGACGCACTCGGATGAGAAGCGATTCCAATGCGAAGAGTGTGGCAAGTGGTTGAAGAGCAAGGAATGTCTCCGCAATCACTCCGTGCTGCACACGCCGGCTGTGACCGAGAAGCCATTCAGGTGCGACACTTGTTCGAGATCGTTCCTACGCAAGTCGAACCTCAGGTCGCACATGTCCTGCCACACTGGGTTAAAGCCCTACGTCTGCGAGGTTTGCGCAAAAGCGTTCTCTCATATGGGGAACCTTAATGCCCACATGGACATTCACATGGTGAGGAAACGTTTCCAGTGCGACAAGTGCGATTTTACCACAGTCAGTAAAAGTTACGTGAAGATTCACAAGAGGAAGACGCACGAGGATGAATTGGACGGCACTGATTCCGGTGGAACTTCCTCTCGTGCAGATTAG
- Protein Sequence
- MMTFPLQSNLVPSSPTWPLPETTEAFRKRLSSRTSRKDSDEVEGFVEEEIPVVSEDEDPLQSVTVVRREEDDGAKWVLAPGLPTPPSQEATKVIQKGPSSLVNWKDSDEVEVVETLKEESPVTSCHEDPLREVTVSRKERKRGHGGKVTLKDDVDGNESISDADTCGQEIHWKVGSACTGVFNDAALADPLAMTDKKEDAVAGESSSEAVTYNQIDLQENDTLDAGASTVVCLPIVMGKLCGAKEEDNSSESLAGEGALGVEDIAEDESRLTSVTSVISVPQPVGNVDTVKVKESVVDNQDDVHRRTLAFGSGDEGDGDLPVKSESEVHVKTRRDELDDEANEIESGTSDDENLGDNGNESDGDGIESKVTDVSLSDDEWVPDRKEASRLKRKNFEIGRGKRQSAEHRCESEARPSPVLMTQPRPLRVERLTKAVESSRDCFRCTSDPLLLASSSRSLLLSKDRVRFSWDIVPMAVTTVCSRPELSAKDDTQCVFRLESKTSNKRRRFGPRTLLDGDSILNAVNNSDSSGTSRREAGVDTPERMDAEGKEMVRKRNAVAEGSSSAKGFRKEGEPEVADYKCSECGEVFSSRGLLANHEKDHFSKNSNKGRSERHRRKKNDADGILFQCEDCGEQLPSQGVLNAHIKKKHMFFVCDICNKVCKQKMNLNRHIRCVHLKNRDYLCGVCGKRFVSNQSLKMHIETVHEKVKAYKCDICWKEFSRKKNLNLHVQTIHVTDTKFSCKLCSRTFKRADYIKKHMRTHTGVRPYACEICPEKFRWASDLKRHMEHHSEKKHVCSICSKQFLDSSVLRKHLLVHSNERPHQCKECPKAFKIKHQLMRHMLIHSELKLHGCAVCGKYFSLRSNMVRHMRIHKGEKSFGCHICSMKFLVKASLQNHILTHSDEKRFQCEECGKWLKSKECLRNHSVLHTPAVTEKPFRCDTCSRSFLRKSNLRSHMSCHTGLKPYVCEVCAKAFSHMGNLNAHMDIHMVRKRFQCDKCDFTTVSKSYVKIHKRKTHEDELDGTDSGGTSSRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -