Pnym154903.1
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- -
- Assembly
- GCA_963573305.1
- Location
- OY754340.1:28960324-28982264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.002 1.7 12.2 0.1 1 21 264 284 264 285 0.94 2 14 0.45 3.8e+02 4.8 2.1 1 19 292 310 292 310 0.96 3 14 1.6e-07 0.00013 25.2 2.1 1 23 340 362 340 362 0.99 4 14 6.7e-06 0.0057 20.0 2.1 1 23 368 390 368 390 0.97 5 14 1.2e-05 0.01 19.3 9.0 1 23 396 418 396 418 0.98 6 14 1.7e-07 0.00014 25.1 0.6 2 23 425 446 424 446 0.97 7 14 4.6e-05 0.039 17.4 0.8 1 23 452 475 452 475 0.96 8 14 6.7e-07 0.00057 23.2 0.2 1 23 481 503 481 503 0.97 9 14 0.00012 0.098 16.1 3.4 1 23 509 531 509 531 0.97 10 14 4.7e-06 0.004 20.5 2.0 1 23 537 559 537 559 0.96 11 14 9.5e-06 0.008 19.6 1.8 1 23 566 588 566 588 0.96 12 14 1.8e-05 0.015 18.7 0.5 1 23 594 616 594 616 0.98 13 14 5.7e-07 0.00049 23.4 1.7 1 23 622 644 622 644 0.97 14 14 2.1e-05 0.018 18.5 0.7 1 23 650 672 650 672 0.97
Sequence Information
- Coding Sequence
- ATGTCCAATGAGACGGTGACGATGGCTGCCGTGGAGGAGACCAGTGAATCGATGCTTTCGGAATCTCATTGCGACGACGAGTGGAGTGGAAGACAGCTCACCGTTGATTCCATCAATCAACTATTAGAGGTCCAGATCAAAGAAGAACCGGAGGACTTGGAGACGCAGGAGGATTACTTGTCCAGCTTGAAGAGGGATCCCAGTGCCAATGAATTGGAGGAGGACACTTTTGGTGCGGCTGTCCCAGAAGATTGTCGGCCTAAGGATGAGAGGCCAAATACAGCTGAGGAGGTGGCTTTAAAAGCCAGCTACGCCAGCATCGAAGGAGCATCACAGTCCATTTCCAACAGGATCGAATCCAAGGCTGACGGTGGAGTCATTACGGCACCCGCGTACATGGTATTGAGGATTGGGGACaaggggaaaaggaaggacaaACCCGATGAAGGTGATGGTGACAGTAAAACATCGGGAAGCGGGGAGGGATCGCGAGCCGGAAGTGTCGGAGGCGGAGGGAGCGAGAGCATGCCTCACCACGTGATATTGCTGCCCGTGAAAGCTGACGGGAAGACTTTGAGTCTGGCGCAGTGCAGCGGAGGATTGGATTGGGCTCAGCGGAGGAGAAGGGAGAAGCCTCCCGCCCTCATCACCAACAGCGTTCAATCCTTCGGCACTAAAATGAATTGCACCACTGCGAAGGTCTCATGTGGCACGAAAGCCATAGCGAGTGATCCACCAGCCATCGTTGCTCCCCTCGTGCGGAAGAAGAAACTCCCGAAGGCTCCCGAATTCAAGTGCGACGAATGCGGAGGGGAGTTCCGAACCAGGAGTTCCATAGTGTATCACTTGAAAGTGCCGGAGACCACGAGCACTTACAAGTGTAGGGTTTGTGAGGTGGACTTCAGGAACCGGTGCGCGTTCGACAGGCACCCGTGTTTTCGCCGAGAGAAGAGCGTggtcaaggaggaggaggaggaaggggagggcggGGCTAAGAGTAAGACGAGGCGGAGAAGGTACACTTGCAACGTCTGTTCCAAGTCCTTCTCTCAGAGCAACTATCTCAATACACACATGCTCACCCATATGGGGGAACGTCGCCACACTTGTAACGTTTGCTCTCAGTCCTTCACGAACAAGGGGAACTTAGGGAAGCACATGTCTCTCCACTCCGGGGACAAGCCTCATTCGTGCAAGGTGTGCTCGCGGTCCTTCAGCCGCAAGCACCACCTGCGGTTGCACATGATGACCCACGTGGAGGACATGCCCGTCTCGTGCAGCGTCTGCCCGCAGTCCTTCTCGAGGAGGAGCGACCTGAGCAGGCACATGCTGACCCACACCGTCGATAGGCCGCACGTCTGCGGAGAGTGCTCGGAGACTTTTGTGCTGCGGAGCCAGTTGGAGCAGCACATGAAGCAGCTTCACGAGGGAGAGGAGGCGTACACGTGCACCGTGTGTCCGAAAACATTCTCCATGCGGGACGAGCTGGCCAAGCACATGGCGCTCCACAAGTCGGACAAGCCTCACGTGTGTCAGATATGCTTCCGCGGCTACACGCAGCGGGGACACTTGAACGAACACATGCTGAAACACAAGGGGATTAAACCACACGCTTGCGAGATATGCTCCAAAGCGTTCGTGCGACGCAGCACCCTGATGCACCACATCCTGATGCACAAGGGCGGAAGGAAGACGCACCCGTGTTCCCTTTGCGCAAAGACCTTCACGGAGAAGAGCAGCCTCAACAAGCACATGTTGCTCCACACGGGAGAGAAGCCTTACTCGTGTAGCATTTGCGCGAGGCCGTTCAGGCAGAAGAACAACCTGGACACGCACATGCTGTTGCACACGGGGAAGAAGCTACACTCGTGCGGCATCTGCGCCAAGTCGTTCTCCAGCAAGAGCAATCTGAAGCAACACATGGTCATGCACACGACAATCGCTTCGTTCAAGTGCCACCAGTGTCCTTTTGTGTTCCCCACGCAGGCGCAGCTGGAAGAACACGCAAAAGAGCATGAAGGAACGACGATTTCGGAAAAGACAGAGTCACCCCTCGGTGTGCGTACGCTTCGGCTGGGCTATCACAAGGTGACCACGCACATCGTTTCGCCGACTTCCCGGCTGGGTCATCGTGAGGTGACCGGCGATGAGCGTGCCTGGGTCATGCTAGCCGTGACCGCGCGATTCGTTCGCCGATATTCGGCGCTGCTGAACCTCCCCTTCCTGTCACCCGGAACCCACCCACCTGCGAGTTCCTTTCCAGGCCAGGTGTTCACCCAGGCAGTTGTAAGTACGATCCTCAATGAATTCTCTCATTAA
- Protein Sequence
- MSNETVTMAAVEETSESMLSESHCDDEWSGRQLTVDSINQLLEVQIKEEPEDLETQEDYLSSLKRDPSANELEEDTFGAAVPEDCRPKDERPNTAEEVALKASYASIEGASQSISNRIESKADGGVITAPAYMVLRIGDKGKRKDKPDEGDGDSKTSGSGEGSRAGSVGGGGSESMPHHVILLPVKADGKTLSLAQCSGGLDWAQRRRREKPPALITNSVQSFGTKMNCTTAKVSCGTKAIASDPPAIVAPLVRKKKLPKAPEFKCDECGGEFRTRSSIVYHLKVPETTSTYKCRVCEVDFRNRCAFDRHPCFRREKSVVKEEEEEGEGGAKSKTRRRRYTCNVCSKSFSQSNYLNTHMLTHMGERRHTCNVCSQSFTNKGNLGKHMSLHSGDKPHSCKVCSRSFSRKHHLRLHMMTHVEDMPVSCSVCPQSFSRRSDLSRHMLTHTVDRPHVCGECSETFVLRSQLEQHMKQLHEGEEAYTCTVCPKTFSMRDELAKHMALHKSDKPHVCQICFRGYTQRGHLNEHMLKHKGIKPHACEICSKAFVRRSTLMHHILMHKGGRKTHPCSLCAKTFTEKSSLNKHMLLHTGEKPYSCSICARPFRQKNNLDTHMLLHTGKKLHSCGICAKSFSSKSNLKQHMVMHTTIASFKCHQCPFVFPTQAQLEEHAKEHEGTTISEKTESPLGVRTLRLGYHKVTTHIVSPTSRLGHREVTGDERAWVMLAVTARFVRRYSALLNLPFLSPGTHPPASSFPGQVFTQAVVSTILNEFSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -