Pnym156089.1
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- -
- Assembly
- GCA_963573305.1
- Location
- OY754340.1:58365429-58380717[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.8e-06 0.0049 20.2 0.6 3 23 110 130 108 130 0.98 2 11 2.9e-07 0.00024 24.4 0.8 1 23 136 158 136 158 0.98 3 11 1.5e-07 0.00013 25.3 3.0 1 23 164 187 164 187 0.98 4 11 5.6e-07 0.00047 23.4 0.0 1 23 195 218 195 218 0.98 5 11 0.0055 4.7 10.9 0.0 1 21 219 239 219 243 0.90 6 11 3.3e-06 0.0028 21.0 0.2 2 23 249 270 248 270 0.96 7 11 9.2e-06 0.0078 19.6 0.7 1 23 276 298 276 298 0.98 8 11 1.7e-06 0.0014 21.9 1.8 1 23 304 326 304 326 0.98 9 11 1.5e-07 0.00012 25.3 3.8 1 23 333 355 333 355 0.99 10 11 3.1e-06 0.0026 21.1 0.4 1 23 362 384 362 384 0.98 11 11 1.4e-07 0.00012 25.3 1.3 1 23 390 413 390 413 0.95
Sequence Information
- Coding Sequence
- ATGTTGTTTCTTTCGTTGCAGATCAACTTCAGTCCAGCCAGTTTGGTGAAGGTTGAGATGATGATGCCAGAGGCGGAAGACAATGAGGAGGAGCATCACATAGCATTCCATGCGCATTACTTGGACCGAGGTGCAGATGAAGATGAAGTCATCGGAAAAGCAGACCATCAAGGCAAGGTAGTCGGAGGGAAACGGACTGGGGATAGGCCGTCGCCATGGGGAGAAGACGTTTCCATAACGGGCCGCGATGGAATGGTGACGCTGGCGGAGATGGTGGATGCCACTGGCCTGCTGATGGCGCCCGGTGACGAGGCGAAGCCGTTTGGGTGCGGCATTTGCAGCAAGCGCTTTGCTCGGAGCAACAAGCTGGTGCAGCACATACGAACACATACGGGGGAGAGGCCGTTCGTGTGTGAGATTTGTGGCCGGGCCTTCAACCGCAAGGACAAGCTTTCCCTCCACCGCAAGACCCACAACTCGGACAAGCCGTACCAGTGCCCGACATGCGGGAAGGCCTTCTGCCGCAGCGACTACCTCCTGCAACACCGCAAGACCAACCACCCAGACGAAGACATACCACACTTCCCCTGCTCGGAATGCGGCACAGCCTTTGCCAAGGAGAAGGACCTCACGGCACACATCAGGACAGCGCACTTCTCCTGTGCCGATTGCAACCAGATATTCCAGACTGAGGCGGACCTTGTCGCGCACGCGGCATCTGTGGACCACAGCGGAGCACGGTTGGAGTGCGTGGATTGCGGTAAGGTTTTTGAGGACCGGGAGAAGCTACGCAAGCACGGTAAGGTGCATCGGCGTGATGCGGCATACTCCTGTGAGTGGTGCGGTAAGGTGTTCTACCGCATGGACAAGATGTTGCAGCACCGTAGGGTGCACACGAAAGAGCGCCCTTACCACTGTGATGTGTGCGGGAAAGGGTTTTCCCGCAGCGACAAGATGACGGAGCATCGCAGGATACACGACACGAGCGTGAAGCCGTACGAGTGCCCCGAGTGTCACAAGAGATTCACACGCAGCGACTACCTCCTCCAGCACCGCAAGACGCACGTGGAGGACGCAAGGAAGTTCAAGTGCGAGACGTGCAACAAGGGTTTTGTGTCGAACAAGGATTTGATCATTCATCAGGGCACGCACTCTCTGGAGAGACCTTTCAAGTGCGAGGAGTGCGGGAAGACATTCAAGAGGAAGGGCGCGTTGAACTCACACAAGAAGGGCACGCACTTGCGGGAACAGAGTCAGATATTGGGAGGCGTGCCTTGGGCTCCGTTGAAGCAAGACATACTCGCGACGTACCTGCAGACGCCTCTGGCATGA
- Protein Sequence
- MLFLSLQINFSPASLVKVEMMMPEAEDNEEEHHIAFHAHYLDRGADEDEVIGKADHQGKVVGGKRTGDRPSPWGEDVSITGRDGMVTLAEMVDATGLLMAPGDEAKPFGCGICSKRFARSNKLVQHIRTHTGERPFVCEICGRAFNRKDKLSLHRKTHNSDKPYQCPTCGKAFCRSDYLLQHRKTNHPDEDIPHFPCSECGTAFAKEKDLTAHIRTAHFSCADCNQIFQTEADLVAHAASVDHSGARLECVDCGKVFEDREKLRKHGKVHRRDAAYSCEWCGKVFYRMDKMLQHRRVHTKERPYHCDVCGKGFSRSDKMTEHRRIHDTSVKPYECPECHKRFTRSDYLLQHRKTHVEDARKFKCETCNKGFVSNKDLIIHQGTHSLERPFKCEECGKTFKRKGALNSHKKGTHLREQSQILGGVPWAPLKQDILATYLQTPLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00797271;
- 90% Identity
- iTF_00307089;
- 80% Identity
- -