Basic Information

Insect: Pyrrhosoma nymphula
Gene Symbol: -
Assembly: GCA_963573305.1
Location: OY754331.1:39016466-39018022[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 8.2e-06 0.0069 19.8 0.1 2 23 7 28 6 28 0.97

2 16 0.0089 7.5 10.2 0.5 1 23 34 56 34 56 0.94

3 16 0.0083 7.1 10.3 1.1 2 23 63 85 62 85 0.94

4 16 0.0044 3.7 11.2 0.1 2 21 91 110 90 111 0.93

5 16 3.6e-06 0.003 20.9 0.4 2 23 118 139 117 139 0.94

6 16 0.0023 2 12.1 0.1 1 21 145 165 145 166 0.94

7 16 0.0002 0.17 15.4 0.0 2 23 175 196 174 196 0.97

8 16 5.7e-06 0.0048 20.3 0.3 2 23 203 224 202 224 0.97

9 16 7.4e-05 0.063 16.8 0.6 2 23 230 251 229 251 0.96

10 16 0.00012 0.099 16.1 0.1 3 23 255 275 254 275 0.98

11 16 0.00036 0.31 14.6 0.2 1 20 292 311 292 314 0.94

12 16 2.1e-07 0.00018 24.8 3.2 1 23 320 343 320 343 0.98

13 16 0.0048 4.1 11.1 2.7 1 23 349 371 349 371 0.96

14 16 0.0022 1.9 12.1 0.1 1 23 377 399 377 399 0.97

15 16 3.1e-08 2.6e-05 27.4 0.8 1 23 408 430 408 430 0.98

16 16 0.0011 0.9 13.1 5.7 1 20 436 455 436 456 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	8.2e-06	0.0069	19.8	0.1	2	23	7	28	6	28	0.97
2	16	0.0089	7.5	10.2	0.5	1	23	34	56	34	56	0.94
3	16	0.0083	7.1	10.3	1.1	2	23	63	85	62	85	0.94
4	16	0.0044	3.7	11.2	0.1	2	21	91	110	90	111	0.93
5	16	3.6e-06	0.003	20.9	0.4	2	23	118	139	117	139	0.94
6	16	0.0023	2	12.1	0.1	1	21	145	165	145	166	0.94
7	16	0.0002	0.17	15.4	0.0	2	23	175	196	174	196	0.97
8	16	5.7e-06	0.0048	20.3	0.3	2	23	203	224	202	224	0.97
9	16	7.4e-05	0.063	16.8	0.6	2	23	230	251	229	251	0.96
10	16	0.00012	0.099	16.1	0.1	3	23	255	275	254	275	0.98
11	16	0.00036	0.31	14.6	0.2	1	20	292	311	292	314	0.94
12	16	2.1e-07	0.00018	24.8	3.2	1	23	320	343	320	343	0.98
13	16	0.0048	4.1	11.1	2.7	1	23	349	371	349	371	0.96
14	16	0.0022	1.9	12.1	0.1	1	23	377	399	377	399	0.97
15	16	3.1e-08	2.6e-05	27.4	0.8	1	23	408	430	408	430	0.98
16	16	0.0011	0.9	13.1	5.7	1	20	436	455	436	456	0.96

Sequence Information

Coding Sequence: ATGCATGGAGATGAGCTTAAGTGTGAAGTCTGTGGGGACACATTCACCAGTGAAGGAAGTCTGGAAGAGCACATTAGGACTCATGATGGTGAGAGCAGCTACCTTTGTGAAGCATGCGGTGAAAGTTTTGAATCGTTCTTTTTGTTCCGCGTTCATAAGTTGAGTCACATGTACCCTGGTATACAGAGATGTGAGTTATGTGATACATGCTTTCATGACATGGAGGAGTTGGACAGCCACCTGGCTGTAGTTCATAGGAGGAAGAAAATCCAGTGCAGTACTTGTGGTGAAGGATTCTTCTCAATGGCAAGTTTGAACCAGCACAGAGAGAAACAGAAATGCACCAATGTCAGTTGCAAGGTATGTGGAAAAGTGTTTACCACTCTGAGGAATCTGAGAATGCATTCTGAGGTCCACTATCCTGGGAAGAATTACCTGTGCGACAGGTGTGGGAAGGGCTTCCAGAAGATGGAAGGCCTGAGGAGTCACATCAGAGGCAATCGTTGCATGATCACTGTCGTGCCCTGTGATGTGTGTGGTCGTACTGTAGGAAACCAAGCCCGTCTCAATGTTCACATGCAAGTCCACAGGGAAAAGAAGAAGCTCCAATGTGATGTGTGTGGGAAAACCTTCCTCACTTCAGCGAACATGAGGCAGCACATGATAACTCACCAAGTTCCCAATATCCCGTGCCTGATATGTGGCATTCTCTTTGTGCGTAAGTCACACATGTTGCTCCACATGAAACGTCACCGTGTTGCCTGCAATACCTGTGGCGAGGTGTTTGAAAACACACCCCTCCTGGTGGAGCACCAAAAGACTCACTCAGAGGGAGGGGAAAGTTCTGTAACCTGCCAGACCCAGCCCGAACTGTATGAGTGTGATGTGTGTGGTAAGCAGTACATAACTTCTAGAGGGCTTAAGCTTCATAAACCAATTCACTCGGACGAGCGCCCGTACAAGTGTAACATTTGTGACAAACGTTATAGACGTCAGAAAGATCTTGCCAAGCACACGAGGAAAACTCATCGTGGTCCCCAGCCTTATCGTTGTCGCTTTTGTCCCTGCACTTATGTCACCCAGCAAATGCTGTTGAAGCATGAAAATGGACACACTGTTGGCAAACCATTCAAATGTGACATTTGTGGCCTTGGATTTTGGTCTGCCTTAAGCCTCGAGAAGCATCTTGTCAAGCATGCCAATGATAGTCTCATTAGAAAGTATGTGTGCAATTACTGTGGGAAGTCATTCCCTCAGCAATCCTCCTTGATCTCTCACAAGAGTACTCATACAAAGCACTTGAATTACAAGTGTTCATTCTGTCCCCGTAAGTTCTCACGTTTTGGTTACTTGAAGAGGCATAAGTGTCCATTTGATCCTAGTCTACAGATCTCTTCGACCTCCATACAAGGTTCTACTTACCCTGAAGACACACCAACAATTTTGGCGGATGGCAGTATTCTTCAGCTTGTACAACCAGAAGATCCAGGAGGTGGGGAAAATGTAAATGCAGGTAATTTTATCAGTGAAGAGGTATTCTTTAGTATCGTaatgtaa
Protein Sequence: MHGDELKCEVCGDTFTSEGSLEEHIRTHDGESSYLCEACGESFESFFLFRVHKLSHMYPGIQRCELCDTCFHDMEELDSHLAVVHRRKKIQCSTCGEGFFSMASLNQHREKQKCTNVSCKVCGKVFTTLRNLRMHSEVHYPGKNYLCDRCGKGFQKMEGLRSHIRGNRCMITVVPCDVCGRTVGNQARLNVHMQVHREKKKLQCDVCGKTFLTSANMRQHMITHQVPNIPCLICGILFVRKSHMLLHMKRHRVACNTCGEVFENTPLLVEHQKTHSEGGESSVTCQTQPELYECDVCGKQYITSRGLKLHKPIHSDERPYKCNICDKRYRRQKDLAKHTRKTHRGPQPYRCRFCPCTYVTQQMLLKHENGHTVGKPFKCDICGLGFWSALSLEKHLVKHANDSLIRKYVCNYCGKSFPQQSSLISHKSTHTKHLNYKCSFCPRKFSRFGYLKRHKCPFDPSLQISSTSIQGSTYPEDTPTILADGSILQLVQPEDPGGGENVNAGNFISEEVFFSIVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -