Basic Information

Insect: Pyrrhosoma nymphula
Gene Symbol: -
Assembly: GCA_963573305.1
Location: OY754335.1:124253859-124260724[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.4e-09 8e-06 28.5 0.0 3 39 17 53 15 59 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.4e-09	8e-06	28.5	0.0	3	39	17	53	15	59	0.90

Sequence Information

Coding Sequence: ATGGTCCACAAATACAAGAGGAAAAGCGAGCAGCAATCATGGGATGCGGGTGCGATGCAGAGAGCTATAGAAGCGGTCACAAATGATGGAATGCCCTATTCAACTGCGGCCAAAACGTTCTCCGTTCCAAGAAACACTCTGAAGAGGAGGGTCCTTGGTAAGAATATTGACGCCAAGGGCCACATAAAGGTGTTGGGGAAGTACCGTGCTGTTTTCACAGAAGAACAAGAAGCAGAACTGgGCGTTCAAGAGAAACATTTCCACCCTGCCCACAGTGTTTTTAATGTAGATGAAACTGGGCTCGTAACAGTTCAATCAAAGAGCTCTAAGATTCTCGCTCTCAAGGGTAGGAGACAAGTTGGAGCTCTGACATCAGCAGAAAGAGGCCAGCTGTCGACCTTTGTTGTGTGCATGTCAGCTGGCGGAAACTTCATTCCTCCATTCGTTATTTTTCCAAGACTTCGAATGAAAGCAGAGCTCCAAGATGGAGCTCCACCAGGAACAATGATTGTATGCCACCCGTCTGGTTGGATGCAGAGCGATATTTTTCATCAGTGGTTTGACCATTTCCTTGCTCATGCCAAACCATCAGCTGCCGACCCAGTGTTGTTAATATTAGATGGTCATTCTACCCATGCAAAAAACCTGGCATTTATTGAAAAAGCGAGGGAGAAGCACACTACCGTGTTTCAAGTTAGCCGACTTCTTGGGGAAGCTTTCTTAAAAGCAGCAACTCCAGCCACAGCAATAAATGGATTTCGCAAGTGCGGCATTGTGCCGCTAGACCAAGATGTCTTCACAGAAGCTGATTACGTTGCTGCCGAATGCACTGATGTGCCTCTTCAACAGCCTAGACCAAATCAAGAAGGGCTTGAAGCACGTCAGACTGAAGACCCCGTACTTGAGGCAGCTGAAGAAGACGTGGGAGAAGGCCTACTTCTCGAAGACCCACAAGATCAAACTGAGGCTGGGCAAGAATATCTACAACCTGGACCATCTTCGAGACCCCAGCCAGATCCACCCTCCAGTCCACAACCTGGGACCTCTTCCAGCTCACAAACAGGACCTTCCTTCGCTTCGGACGGTgatgacctctctctctctcctgaccACGTCGGACGGTGCActtctcaacctctctctctctgccgtgtAACGCCTGGACTGCCTCTACGCTTCGCGACTCACCAGCTAAAAGAGAAAGTAAAATCATTCGTCTTGGCGGACCCGACTTTTGATGTACCCTCTCCTGTTGATGTTTTAATTGGAGCTGATCTTTTTCCTCACGTTTTTACTGGACTCCGCTGCTTCCTTGGAGATAATTATCCAGCGGCTTTTGATACCATTTTTGGCTTCGTACTAATGGGAACAACTTCAATCATTCCAGCCTCTGAAAGCAATTTTCAGGACTCTGTCGCTCTAATTTCAACTCATGATTCTGATCTTCATGCTTCTATCCAACAGTTTTGGCAGCTGGAGGAAGTACctcatctctctttctcccctcaAGACCGACTATGTGAAGAGCATTTTCAATCTACGCATACCAGAGATGAAACGGGCCGTTACGTCACTCGGTTGCCGTTCAAGGATCATCATCCCCCTCTCGGAGATTCATCGCTCAACGCCAAAAGAAGATTCTTTGGATTGGAAAGAAAACTGTCAGCACAACCCCTCCTGAGAGAGAAGTATATTAAGTTTATGTCAGAATATCAGGACCTAGGTCATGTGGAACCTTGTAGTCAACTCCCAAGATTTCTGCATTATTTCCTATCGCATCATGGAGTCTTTAAAAATCAGGATAGAAATTCCAATTTGCGCGTGGTGTTTGATGCTAGTTCAAAGACTTCAACTAACGTCTCACTCAATGACATTTTACTGTCGGGGCCAAAATTACAAAATGACATTTGTGAAGTTATTCTGCGTTTTAGGTGCCATTCAGTTGTTTTCGCCTGTGATATCCGTCAAATGTATCGACAGATCAAAATACATCCCGATGACCAGCACTTCCAGTTGATTTTCTGGCGTGAAAACCCTACGGACCCTATCACAGTATACAAATTGACAACTGTTACTTACGGAGTCACAAGCGCACCATTTCTAGCTATCCGCACCCTTCACCAGTTGGCTGAAGATGAAGGCGCCAAGTTTCCGCGAGCTGCTCACGTCCTAACCTCTCAAACTTTTGTTGACGACATCATTGCTGGCGCAGATAGTGTGCAAGAGGCACTTACACTTCAAAACGAATTAACACAGCTTCTCTCATTAAGTGGTTTTCAGCTAAGAAAGTGGTGCAGCAACTCGGATCTTTTGGTATCCAACATTCCGGAGGAAGATAGGGAAATACCTCTCTCCTTCCAGCATTCAGAGCAACCTATTTATAATATACTGGGAATGCAGTGGAATTCTGCCTCTGATCAGTTTTCCTATGCTGTGCATACATCCAACATACCACTCTCTAAACGATCAGTGCTTTCCGCTGTTGCAAGAATTTACGACCCCTGTGGTTGGTTGGCTCCTGTATCACTTTTAGCCAAGTCATTCATACAACATTTATGGACCCTAGGCCTTCAATGGGATGATCCATTACCTCCAAATATTGCTCTCCAGTGGGAAAACGTTCTGAAACATCTCTAG
Protein Sequence: MVHKYKRKSEQQSWDAGAMQRAIEAVTNDGMPYSTAAKTFSVPRNTLKRRVLGKNIDAKGHIKVLGKYRAVFTEEQEAELGVQEKHFHPAHSVFNVDETGLVTVQSKSSKILALKGRRQVGALTSAERGQLSTFVVCMSAGGNFIPPFVIFPRLRMKAELQDGAPPGTMIVCHPSGWMQSDIFHQWFDHFLAHAKPSAADPVLLILDGHSTHAKNLAFIEKAREKHTTVFQVSRLLGEAFLKAATPATAINGFRKCGIVPLDQDVFTEADYVAAECTDVPLQQPRPNQEGLEARQTEDPVLEAAEEDVGEGLLLEDPQDQTEAGQEYLQPGPSSRPQPDPPSSPQPGTSSSSQTGPSFASDGDDLSLSPDHVGRCTSQPLSLCRVTPGLPLRFATHQLKEKVKSFVLADPTFDVPSPVDVLIGADLFPHVFTGLRCFLGDNYPAAFDTIFGFVLMGTTSIIPASESNFQDSVALISTHDSDLHASIQQFWQLEEVPHLSFSPQDRLCEEHFQSTHTRDETGRYVTRLPFKDHHPPLGDSSLNAKRRFFGLERKLSAQPLLREKYIKFMSEYQDLGHVEPCSQLPRFLHYFLSHHGVFKNQDRNSNLRVVFDASSKTSTNVSLNDILLSGPKLQNDICEVILRFRCHSVVFACDIRQMYRQIKIHPDDQHFQLIFWRENPTDPITVYKLTTVTYGVTSAPFLAIRTLHQLAEDEGAKFPRAAHVLTSQTFVDDIIAGADSVQEALTLQNELTQLLSLSGFQLRKWCSNSDLLVSNIPEEDREIPLSFQHSEQPIYNILGMQWNSASDQFSYAVHTSNIPLSKRSVLSAVARIYDPCGWLAPVSLLAKSFIQHLWTLGLQWDDPLPPNIALQWENVLKHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -