Pnym134179.1
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- -
- Assembly
- GCA_963573305.1
- Location
- OY754337.1:82501324-82501842[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-12 7.7e-09 38.2 0.0 1 34 18 51 18 56 0.96 2 2 4 9.3e+03 -0.5 0.0 14 21 137 144 135 147 0.86
Sequence Information
- Coding Sequence
- ATGCCAAGAACGAAGCCTAAGTATTCTCTCAAAAACATCAGGAAGAAGTGGGACCCAGAAGACATGGAAAAGGCAATTATTGCCGTTaggggaaagaaaatgggaatTCTGAAGGCTTCCAAGGAGTTCAATGTGCCCCGCACCACTCTTCAAACTCTCGGCAATAAGAGTGATTTAACACCTGCGGAAGCAGCACGTATAAAGCTTGGACGAAAGCCGTACTTGGGACATGATCTTGAGGAAGCACTTGTTTCCTACCTACTCACTATGGAGCAGAAGTTTTTTGGGTGCACCATCAAGGATGTAAAGCAAATGGCGTACCAACTTGCGTTGAGGAACAATCTGCCCGTTCCAtttgaaaatgaagctggaggaaggGCTTGGGTGGATTTATTTCTGAACCGCCACAAGGGTCAGCTGTCACTCCGGAAACCATGTGGAACTTCCTACGCCAGGGCTTTGGGATTCACTAAAGAGAATGTGGATGCCTTCTTCACCATTACAGGAAGTCTACGATAA
- Protein Sequence
- MPRTKPKYSLKNIRKKWDPEDMEKAIIAVRGKKMGILKASKEFNVPRTTLQTLGNKSDLTPAEAARIKLGRKPYLGHDLEEALVSYLLTMEQKFFGCTIKDVKQMAYQLALRNNLPVPFENEAGGRAWVDLFLNRHKGQLSLRKPCGTSYARALGFTKENVDAFFTITGSLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -