Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.064 5.6 8.5 1.9 1 23 38 64 38 64 0.87

2 7 0.0061 0.53 11.7 0.6 2 23 136 157 135 157 0.95

3 7 0.056 4.9 8.7 0.2 1 23 161 183 161 183 0.96

4 7 0.0016 0.14 13.5 0.9 1 23 188 211 188 211 0.91

5 7 0.69 60 5.2 2.3 1 14 217 230 217 240 0.81

6 7 0.00067 0.058 14.7 0.6 2 23 248 270 247 270 0.96

7 7 0.00037 0.033 15.5 2.3 1 23 299 321 299 321 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.064	5.6	8.5	1.9	1	23	38	64	38	64	0.87
2	7	0.0061	0.53	11.7	0.6	2	23	136	157	135	157	0.95
3	7	0.056	4.9	8.7	0.2	1	23	161	183	161	183	0.96
4	7	0.0016	0.14	13.5	0.9	1	23	188	211	188	211	0.91
5	7	0.69	60	5.2	2.3	1	14	217	230	217	240	0.81
6	7	0.00067	0.058	14.7	0.6	2	23	248	270	247	270	0.96
7	7	0.00037	0.033	15.5	2.3	1	23	299	321	299	321	0.97

Coding Sequence: ATGGACgGCGACGGGGACTCGAACAGAGAGAAGACATACCAACTAATAAAAGAAATCAAATCCATCCTTACATTCACGAACGCCACCCCCTACAGGTCCAAAAACATACGCTATTACTGTGTCTACTGTTCCACCGATGGACCTCACTTCGAAGACCCCGATGACCTTCGGACCCACACCAGAACAGCCCACGTGAGCCACAGGACAGAGAAAATAGAATATGCCATGCGACCTTATTGGAGTAATGAGATCCTCAAACTCGATATAGACAACCTCCTTTGTACTGTATGCTGTGTGGTCATAAACAATTGGAACGAAATGTTCaaacatttaaaagaaaaacacggTGTTGTGCTTGACCAAGCCTACACTAGGGTAATCCCCTATATTTTGAGAACCGATCTAAACTGCGCGTTATGTAAAGAATCTTTTTCAAATTACTTGCATTTAGACGGGCATATGAACGCTCACTATAACAATTATGTGTGTGACGATTGTGGCGACACATTTTTGGCCCAAACCCGGCTTAAACAACATGTAAAAATTCACAATATAGGCAAATACCCGTGTAGAATGTGCGATAAAGTGTTCACATTACAAAAATATCGGCGGAAACACGAAGAGTTAGTTCACGAGCAAGCATCGAAGTTCAAATGCCTGTATTGCCCTGAAAAATTTACAGGTGAGTACTTGAGACATTTACATTGCTTAGAAGTTCATGAAGATAAAGTTAAAGTTATAACTTGCGAACTATGTGGGCAGACGTTTAGTTGGCGCCAGTATTATCTAGCTCATATGAGGAAAAAACACGATCAGAACAAGTACGAATATGAAAAGGACTTTGGCTCCTACGAAATTAAagtaaagaaattaagacatgTTAATACTAAAAACTATGAGTGTTCCGTTTGTCATAAGAAATATGTTTCGGTTAATTCGCTTAAACAACATGCGAAACAGCATGAAAAGGAAAATTAG
Protein Sequence: MDGDGDSNREKTYQLIKEIKSILTFTNATPYRSKNIRYYCVYCSTDGPHFEDPDDLRTHTRTAHVSHRTEKIEYAMRPYWSNEILKLDIDNLLCTVCCVVINNWNEMFKHLKEKHGVVLDQAYTRVIPYILRTDLNCALCKESFSNYLHLDGHMNAHYNNYVCDDCGDTFLAQTRLKQHVKIHNIGKYPCRMCDKVFTLQKYRRKHEELVHEQASKFKCLYCPEKFTGEYLRHLHCLEVHEDKVKVITCELCGQTFSWRQYYLAHMRKKHDQNKYEYEKDFGSYEIKVKKLRHVNTKNYECSVCHKKYVSVNSLKQHAKQHEKEN

Sequence clustering based on sequence similarity using MMseqs2