Basic Information

Insect: Pyrrhia umbra
Gene Symbol: -
Assembly: GCA_963891755.1
Location: OY982946.1:3083528-3087324[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.5 2.2e+02 3.4 1.0 1 15 125 139 125 143 0.86

2 11 3.5 3e+02 3.0 0.4 1 9 156 164 156 166 0.84

3 11 1.6 1.4e+02 4.1 1.4 2 23 184 205 180 205 0.79

4 11 0.12 10 7.6 0.9 1 23 228 249 228 249 0.85

5 11 0.1 9.1 7.8 4.0 2 23 290 311 289 311 0.95

6 11 0.0014 0.12 13.7 0.2 2 23 327 348 326 348 0.97

7 11 6.8e-08 5.9e-06 27.3 2.4 1 23 354 376 354 376 0.99

8 11 6e-05 0.0052 18.0 0.4 3 23 383 403 381 403 0.95

9 11 0.003 0.26 12.6 2.0 2 23 410 432 409 432 0.96

10 11 0.029 2.5 9.6 0.2 1 20 439 458 439 459 0.95

11 11 0.00086 0.075 14.4 0.4 3 23 471 492 470 492 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.5	2.2e+02	3.4	1.0	1	15	125	139	125	143	0.86
2	11	3.5	3e+02	3.0	0.4	1	9	156	164	156	166	0.84
3	11	1.6	1.4e+02	4.1	1.4	2	23	184	205	180	205	0.79
4	11	0.12	10	7.6	0.9	1	23	228	249	228	249	0.85
5	11	0.1	9.1	7.8	4.0	2	23	290	311	289	311	0.95
6	11	0.0014	0.12	13.7	0.2	2	23	327	348	326	348	0.97
7	11	6.8e-08	5.9e-06	27.3	2.4	1	23	354	376	354	376	0.99
8	11	6e-05	0.0052	18.0	0.4	3	23	383	403	381	403	0.95
9	11	0.003	0.26	12.6	2.0	2	23	410	432	409	432	0.96
10	11	0.029	2.5	9.6	0.2	1	20	439	458	439	459	0.95
11	11	0.00086	0.075	14.4	0.4	3	23	471	492	470	492	0.96

Sequence Information

Coding Sequence: ATGGATTCCGATGACAGTTCGAGACTTGTTATCAAAGAAGAGCCTATCGATGATTTCGATGATTATGATAATCGATACGAATACAGTATCGAAGAGAATCAAACTGAAAACATTgtacaaacaaatataaaacagGAAGACGAAGATGTCGACGAATTTGAAGATGACATCATCAAACTCAACATCAACATCGAAGATTTGCTAGCCAAACAAGAATCGAGTCGAGTATTCGAACATCCATCGGTTAGAGAATCGAATGAACAAACAAAATCTATAACAGAAACTGAAGAAATGCCACGACCGATTAAAATCGAAAAAGAATCGATACTCGAACCTGAAATTGTTATATCCGATGTTAAACAGAAGAATTTGTATCGATGTTCCAAATGTCCTTTTAAGGGGAAACACAAATCATATATCGAGCATATTGAGACCGATTGTCCACAAACAATGGGCAATAAGCACTACACATGTACTAAATGTGGCCTAGACTACGCGTGCTTGAAAATATACCTAGGACATTTCATGAAGCATGGTTTCAAATGTCTATCGTGTCCGGAATGCTTGAAGCAATTCTACACCTTCGGAAAACTGGGACCACATGTTCTTAGCCATATTAAACAGAATTTTGTTCGGATTAAAACGATAACTCATGAGTTGACAGCTAACCAAAAACCGGGTTATCAATGCAGGAAGTGTGGTAAGACTGTGAAGATTGATGAGTTTTTCCAACATTGGGAGTTGCACATCAGTTGCAATCCGAGGAGGATGGCTCAAGCGGTTGAGGAAAGGAGTCCTCGGTTGGAGGGCAGCATTTCTGAAAGTGTTATCCAAGATTGTATTACTTGCATGCAGCAATCACCAAAACAATGTGTGTACTGCAAGCGGCGGTTCAAACGAGTGAATGAATGCAAACGGCACATCATTGAGCATCTACTAGCAGACGCATACTCGCAGAAACAGCTACTCGGCGTACTAAAATGTCAGATTTGCAACATCGGATACTCTGCACCGGAAAAATACAAGCAACACATGCGCGATCACGCGTCTCTGCCCGTGTATAAGTGTGAGATATGTGACCGGACATTCAGTGATTCCAGTAATTTcactaaacataaaaaagtgCACAATTTGAAGGTTGTCATTTGTGATTTGTGCGGCAAGAAATTTCAGTCTAAAACTTCGTTGGCGAAACATCTTGAgCAACACAAGAAATCAGAGCCAATAACATGCAAGATATGCTTCAAGATATTCTACTTTGAAACAACATACAAGCGACATGTAAGGTATTATCATGAAAAAGTCACTCTGGGCTACCGCTGTGTGATTTGCAATGAACGTTTCAACTCTCTAAAATCAAAATGGGATCACATGTGGGAGGTTCATAAAGAAAGGAAGAATAAAGCTGACTGTCCGGTGTGCTTCAGATCTTTCAGAAAGTATTCCGAGGTACGGGCCCACGCTAAACGTGACCACAATAAGGAGGTTTCGGTTTTCAGTGTCAAAAATGCAACTAAATCTATGGATGATATACATAAATTTTTAGATGATTCCGGTTTTAAAATCGGTGACACTGAAACTTTGGTTGTCTATGGTATTGATGACAGTTGA
Protein Sequence: MDSDDSSRLVIKEEPIDDFDDYDNRYEYSIEENQTENIVQTNIKQEDEDVDEFEDDIIKLNINIEDLLAKQESSRVFEHPSVRESNEQTKSITETEEMPRPIKIEKESILEPEIVISDVKQKNLYRCSKCPFKGKHKSYIEHIETDCPQTMGNKHYTCTKCGLDYACLKIYLGHFMKHGFKCLSCPECLKQFYTFGKLGPHVLSHIKQNFVRIKTITHELTANQKPGYQCRKCGKTVKIDEFFQHWELHISCNPRRMAQAVEERSPRLEGSISESVIQDCITCMQQSPKQCVYCKRRFKRVNECKRHIIEHLLADAYSQKQLLGVLKCQICNIGYSAPEKYKQHMRDHASLPVYKCEICDRTFSDSSNFTKHKKVHNLKVVICDLCGKKFQSKTSLAKHLEQHKKSEPITCKICFKIFYFETTYKRHVRYYHEKVTLGYRCVICNERFNSLKSKWDHMWEVHKERKNKADCPVCFRSFRKYSEVRAHAKRDHNKEVSVFSVKNATKSMDDIHKFLDDSGFKIGDTETLVVYGIDDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -