Pumb028876.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrrhia umbra
Gene Symbol
-
Assembly
GCA_963891755.1
Location
OY982947.1:4395886-4396929[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.17 15 7.1 0.9 3 23 29 50 27 50 0.90
2 10 1.4 1.2e+02 4.3 1.0 2 23 75 97 71 97 0.81
3 10 0.00034 0.03 15.6 1.1 1 23 119 141 119 141 0.98
4 10 0.0079 0.69 11.3 0.9 1 21 145 165 145 166 0.94
5 10 1.8 1.6e+02 3.9 0.7 2 20 176 194 176 196 0.87
6 10 1.3 1.1e+02 4.3 1.1 1 23 203 226 203 226 0.89
7 10 5.4e-05 0.0047 18.1 3.6 1 23 233 256 233 256 0.97
8 10 6.9e-06 0.0006 21.0 1.1 1 23 261 283 261 283 0.97
9 10 3.4e-05 0.003 18.8 0.1 1 20 289 308 289 311 0.93
10 10 1e-05 0.00091 20.4 3.8 1 23 317 340 317 340 0.97

Sequence Information

Coding Sequence
ATGTTCGTCGCGCGACAGAACGCCAAAATGATGATAGAGTATACAACCGCTTACCCCTTCAAGCTGCCAGAATCTTCCATGGTTTGCGTGTATTGCTGCGATAGTTTCCAAGACCCCTCAACGTTTAGGGATCATATGAATTCGGAACATCAGGACTTCAAAGTACGAATGGCTTTCGCTCACGTTGCCGAAGGATCTGTTAAAGTCGATTGTACAGATCTAAAATGTAGGATATGCTTTGAAACACTAACAAGCTTAGAGCATGCGGCAGACCATCTCGTCAATATACACAATAAAGACGTGAACCCCAAACATGATCTAGGCTTGCACCCCTTTAAAGTTTATCTAGGCAAATATTCGTGCGCAATTTGCGCggagaaattttcaactttgGCGTTGTTGAGTAAACACACACATACGCACTTTGTACAGTACACGTGTGATGCGTGCGGGAAGTCTTACGCGTCGCTGACGTCACTGCAATGTCACCTCAGGTACAACTGCAGCAGTGGATccgacaaaaacagatgcaggaGATGTAGAAAAGTATTCATGTCAGTCATTGATAAAACGAAACATTTGGAAAAGTCTCAGAGGTGTCGACAGCACGTTTGTAATGTTTGTGGAGACAGATTCCTCACATGGAACATGAAGCAGAGTCATTTGAAGGACACTCATAATATGCCAGAGAAATCATACAATTGTCCGGAATGTCATATGGTTTTTAGTAAACGCGATAAATTGCGTATGCATTTCAAAACTACACATACGAATGATTACTTCGAATGCTCTTATTGCGAGAAAAAGTTTGATAGCGACAAGAATTTGAAGAAACACATTGTAGTACATACAGGGGAAAGAAATTTCATTTGTCCTGTTTGCTCTAAGGCTTTTCCGAGGAAATCTACTCTAGGACAACACATGTGGATACATAGTGatgtaaaaaaacatgaatgtaAGATGTGTGATAAGACTTTTAACCAGAGAGTGAGTTGGAGGACACATATGAAGTCGAGGCATCCTGAATTGAGTGCTGGCTATTAG
Protein Sequence
MFVARQNAKMMIEYTTAYPFKLPESSMVCVYCCDSFQDPSTFRDHMNSEHQDFKVRMAFAHVAEGSVKVDCTDLKCRICFETLTSLEHAADHLVNIHNKDVNPKHDLGLHPFKVYLGKYSCAICAEKFSTLALLSKHTHTHFVQYTCDACGKSYASLTSLQCHLRYNCSSGSDKNRCRRCRKVFMSVIDKTKHLEKSQRCRQHVCNVCGDRFLTWNMKQSHLKDTHNMPEKSYNCPECHMVFSKRDKLRMHFKTTHTNDYFECSYCEKKFDSDKNLKKHIVVHTGERNFICPVCSKAFPRKSTLGQHMWIHSDVKKHECKMCDKTFNQRVSWRTHMKSRHPELSAGY