Pumb026556.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982943.1:8927271-8929145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.34 30 6.2 0.5 2 23 208 230 207 230 0.91 2 9 0.00061 0.053 14.8 1.8 1 23 235 258 235 258 0.97 3 9 0.00021 0.018 16.3 1.3 2 23 262 283 261 283 0.96 4 9 0.0028 0.24 12.7 0.2 2 20 288 306 287 308 0.93 5 9 3.1e-05 0.0027 18.9 3.7 1 23 323 346 323 346 0.95 6 9 0.00041 0.035 15.4 0.1 2 23 353 374 352 374 0.96 7 9 8.5e-05 0.0074 17.5 0.7 1 23 380 402 380 402 0.99 8 9 0.15 13 7.3 3.0 1 23 408 430 408 431 0.94 9 9 0.001 0.088 14.1 3.3 2 23 437 458 436 458 0.97
Sequence Information
- Coding Sequence
- ATGATGTCTTCTTCCACCAGTTTGAGCAATATACTTCGCAATGTGTTGTCTGATACATCGGACTATTGTTGCTTGTGCTTTCATTCTATAGATGAAGAAGAAACCTGTTTTAGTATTAATGACGAAGTTTCATTAGGTATTGATATCAAAACCACTTTAGtaatgaatgaaattatttccAAGCTGTTGGGGGATAAAgtATTGGACAGCATTAAGGCACACAATGTAATTTGCCAAAAGTGTATAGAAATAGTTATAAAAAGCTACAAATTCATTGAACAGTGTAAAAGTAATATTGAGCAGTTGCACTGTATTGTAAAATCTCTCCACAAACACACCCAACATATTAGTGAAGTCAACCGTGATTTTAAATCATTATTTGTTGCTTCGGACACTAGTAATTATAACATTGAATTGTATTATGACAAACACAGACACTGCTCTGATCAAACTTTATTAAAGAAAAGATTTCAAAGGCTACAGAAGGATTCACAAAATCTCTGTGTTGACTTTGAGTTGCAGTCAAACTACAATCCCACCAACAAAAAGTCAGTTACGAAAAAATTTCATTCTAAGACACTTGATGACTTAGTACTCGACAAGGATGACTTAAATAATCTTAGGTGTAAAACATGCTTGAAACAGTTCCCAACAATAGTAAAgataaaacaacattatttagaAGTGCATGCAccaaaaaaattcaaatgttcCAAGTGTCCGAGAAGTTTTGGAGCTTTATTTCTGCTGAAACGGCACACAAAGAATAGTCACTGTAATGTTGTCTGCAGCGCGTGTGGCAAGAAGTACACAAATATTTACTCACTCAGACATCATGAGCGAAGTCACCTATTACGCCTTATTTGTAAAACATGTGGTAAGATGTATAAAGGAAGACAATCATACAATAATcacattgaaaataaaatgtgtgaaaagatgagaaaatcaaatgcTGAAGCCAAATTCTTCTGTGATTACTGTGGTAAAAAATACTGTCAGAAAACATCTTTAGCTGTTCACATTCGCTTCCAACATGAAGATGGTGCAGCGTTGGTATGTGATTGGTGTGGCAAGAAACTTAGTTCCACAAGCCGGCTAAGAGATCATATTCTAATACATACAAAGCAAAAGAATTATGAATGTGATCAGTGTGGAGGACAGTTTGTGTCAAAGACATCATTGCTGTACCACACAAGAACGCATACAGGTGAAAAACCATACCAATGTCAATATtgtgaaatgtcatttttgtcTGCGTCTCGTCGTACTGAACATGTGAAGCGACACCATACAGAGACAAACTTAGAATGTGATATTTGCCATGGCAAATTTAAAGGAAGcaaatctttaaataaacacAGGAAAAAGCATTTCGACGTAAGAAGCAAATTATACCATAACACTCAAGCAGTATAA
- Protein Sequence
- MMSSSTSLSNILRNVLSDTSDYCCLCFHSIDEEETCFSINDEVSLGIDIKTTLVMNEIISKLLGDKVLDSIKAHNVICQKCIEIVIKSYKFIEQCKSNIEQLHCIVKSLHKHTQHISEVNRDFKSLFVASDTSNYNIELYYDKHRHCSDQTLLKKRFQRLQKDSQNLCVDFELQSNYNPTNKKSVTKKFHSKTLDDLVLDKDDLNNLRCKTCLKQFPTIVKIKQHYLEVHAPKKFKCSKCPRSFGALFLLKRHTKNSHCNVVCSACGKKYTNIYSLRHHERSHLLRLICKTCGKMYKGRQSYNNHIENKMCEKMRKSNAEAKFFCDYCGKKYCQKTSLAVHIRFQHEDGAALVCDWCGKKLSSTSRLRDHILIHTKQKNYECDQCGGQFVSKTSLLYHTRTHTGEKPYQCQYCEMSFLSASRRTEHVKRHHTETNLECDICHGKFKGSKSLNKHRKKHFDVRSKLYHNTQAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -