Pumb026540.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrrhia umbra
Gene Symbol
-
Assembly
GCA_963891755.1
Location
OY982943.1:8679997-8682907[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.074 6.4 8.3 0.2 1 23 249 272 249 272 0.93
2 16 9.9e-05 0.0086 17.3 2.0 1 23 277 299 277 299 0.99
3 16 0.0031 0.27 12.6 0.6 1 23 329 352 329 352 0.96
4 16 0.0027 0.23 12.8 0.4 2 23 413 435 412 435 0.95
5 16 0.0005 0.043 15.1 1.0 1 23 441 464 441 464 0.93
6 16 0.00051 0.044 15.1 0.7 2 21 468 487 467 488 0.94
7 16 0.046 4 8.9 0.3 1 23 496 519 496 519 0.94
8 16 0.027 2.4 9.6 0.1 2 23 560 581 559 581 0.95
9 16 0.073 6.3 8.3 1.5 1 23 587 609 587 609 0.97
10 16 0.0057 0.5 11.8 1.8 1 23 645 667 645 667 0.96
11 16 0.019 1.7 10.1 0.2 3 23 673 693 672 693 0.93
12 16 0.0096 0.84 11.1 2.1 3 23 713 734 711 734 0.96
13 16 0.00063 0.055 14.8 2.7 1 23 740 762 740 762 0.98
14 16 0.0012 0.11 13.9 6.0 2 23 769 790 768 790 0.96
15 16 3.5e-05 0.003 18.8 1.4 1 23 796 819 796 819 0.96
16 16 6.5 5.6e+02 2.2 3.6 3 23 826 847 824 847 0.94

Sequence Information

Coding Sequence
ATGGAGGAGGCAGATACGACTAACACTAATGCTGATAATCTAGACTGGATCAAACAGAAGCTCCAGACGATATGGACATCTCCGCAGTTCTGTGGACTGTGCCTAGAGAACAGGGGCAACTTCAGCTCCGTGGACATGGAGCTTGTTATCAGCCATCAAACATATTCTAAATGTTTGCAGgatattttaaactatgtttTTAATGAGGATATTGAAAGCTTGATGTCAAGTCCCTACTTATGCGACAGCTGCACAGAAAAGACAATACAATCTTACCTCTTCATCCACAACACTAAACAGCTGACTAAAATCCTCAACAACTGTGTCTCAGATATTTATTCTAAAGTCATTGACATTAATGGACAACTCGATGATACCATTACATATGATACCGCCAATGTCATGATTGTCCTGGAAAATGACACGGATCTATACAAAACTGTCATTGATGTTAAGTCTATGACTGAAGTAGTGCCTACTGCGAAGCCTATAGCAATGGCAGCTATTAAAACTGAGACACAGGAACCAGACCCTAAGGTCACTCAAGTTGCCAACCCTGAGGAAcctaaagttataaaaaaagtgATAGAAATAGAAGAAccaaaaaaagtcaaagaagTGAAGGAAGTTACAGAAAAGAAAGTTGTGAAAGCTGACGGGACTCCGAATATAACTCTGAAAGAAGGTCACATTGTTATAAAGCCTCTGAGCTCAGTGAGGAACTCAACTCCTCGGTACAATACCTATGCCTGTGCTGACTGCCCTGACATATTCACCACATTCAGGTCACTGAAGGAACATGAAAAAGCTAAGCATAAAAAGTCCGTTTACCGCTGCAAGTTGTGTGAAAAATCTTATAATAcattgcaatatttaaacattcattACTTGACGCATTCAAAAGCTAGATGCAAATTATGCCTTCTTATTCTCCCAGAAGATGAGTTAATGGAACATTTGAGATCAAATCACACAAATTTTGTGTATCCTTGCAATTTTTGCGATTTAGTCTACTATACACAAGAATCTTTGGATACACATTTCAAAATCAGCCATCTAGTCAATGATACAAGAGCTAAATCTCATTGCGTAATGTGTTTAACAAACTTCGTGGAAGACAAACTCAAAAAACATAAATGCAAGTTTTCTTGCTCAGAGTGTTTTGTAATGCCTTGCGTCCACTACAAGTATTTAATGTCTTACCGAGAGCAAGTCTTAAACCATGTTAGTTATATTAAATGCGTAGATTGTGATTACGCGACTCGGCGAAAGGAGCACCTGATTGGCCACGCGAATAGAGAGCATTTGGACCATCATCCATTTACCTGTGCCGATTGTGGCCAACAGTTTTACACTAAGCTGAGTCTAAAGACCCACATTGTACAGTTCCATTCAGATCTGTCCTGTCAATACTGTGACTTTGTATTTAAGGATGCCAAAACATTGGAACATCATAGAAAAGCTTGCAAGGTCGTTATACGGCCGTTCTCTTGTGTCCACTGCGTTGCGTCCTTTGATGTTGCTGAGGAGTTGACAAACCATGAGAATTTAAGGCATAATGAAGGAGTTCACGCCTGCTCTCTCTGCAAAAGCAGATTCCTTACTGAAATAGAATTACAAGAGCACCACGCCAGAACTCATGGCGGTATCCAATGTAAGAAAAGGAGAAAGCATATTGAATGCTCTGTATGTGATATTATGTTCAAGAACATAAAAGAGATGCTTGAACATGAGAAATTGCATAATGAAAATGAAGTTTATCCATGCAAAGTATGTTCGAAGAAGACCAATTCGCTAATGAAATTATACATTCATAATCAAAGGCACTATACTAAGAGGATCAAGTGTATGCAGTGTGGTAAGAAGGTTGCTGCATCATTTTATGGCCAACATAGTGTGAGGTGTCCGTACAAAAAAGATGCTGTATTAAGTCATGTTTGTGAGGTTTGTGGAAAGTCTTTCCATTTGGAATCTTTGCTAGTTTTCCATCAAAGAATCCACAAGGACCCTGAGCCATGCACGCTATGCGACAAGATAATCAAACCATCAAGTCTGAAACGGCATATGGAGCAAGTTCATGGAAATACAAGTGAAAAACAAAGGAAACGAACTGGTCTAATTAAAGCACCCATTGCATGTGAGTTGTGCGGCCATATTGTTAAGAAGAAATGTGACTTAGAGACTCATATGAACCGATACCATCTGAAAATTAAGCCTTATGTCTGTCATATATGCAGTAAAGACTTTTGTGGTAAAGTGCGCTTAAAGGAACATATAGCAACTCATACGAGTGATAATAGTTGCTTTTGTTCCATCTGTGGGAAGAAGTTTGCCAACCGTGTTTGCCTCAAAATGCACTTCAGAATGCATACAGGAGTGGCGCCGTACGCCTGTGATATTTGCGGACAAAAATTCAGGTCGTCAAGTTTAATGAAGACCCATAGACTGAAGAAACATTTAGAGAAGACTGTGTGCTGCCCTCTTTGTGATAATATGTTCTTTATGGTCAGAGATATGAGGCATCACTTTAAAAAGGCACATTGGAAGAACAAAGATGGGAGGCCGTTCAATCCTGAAGATGTGAAAGAGTTACCGAAGGAACTTTACTATCTGTTTGAAGATGGCAGGCTACCGAAACTTACTTGA
Protein Sequence
MEEADTTNTNADNLDWIKQKLQTIWTSPQFCGLCLENRGNFSSVDMELVISHQTYSKCLQDILNYVFNEDIESLMSSPYLCDSCTEKTIQSYLFIHNTKQLTKILNNCVSDIYSKVIDINGQLDDTITYDTANVMIVLENDTDLYKTVIDVKSMTEVVPTAKPIAMAAIKTETQEPDPKVTQVANPEEPKVIKKVIEIEEPKKVKEVKEVTEKKVVKADGTPNITLKEGHIVIKPLSSVRNSTPRYNTYACADCPDIFTTFRSLKEHEKAKHKKSVYRCKLCEKSYNTLQYLNIHYLTHSKARCKLCLLILPEDELMEHLRSNHTNFVYPCNFCDLVYYTQESLDTHFKISHLVNDTRAKSHCVMCLTNFVEDKLKKHKCKFSCSECFVMPCVHYKYLMSYREQVLNHVSYIKCVDCDYATRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHSDLSCQYCDFVFKDAKTLEHHRKACKVVIRPFSCVHCVASFDVAEELTNHENLRHNEGVHACSLCKSRFLTEIELQEHHARTHGGIQCKKRRKHIECSVCDIMFKNIKEMLEHEKLHNENEVYPCKVCSKKTNSLMKLYIHNQRHYTKRIKCMQCGKKVAASFYGQHSVRCPYKKDAVLSHVCEVCGKSFHLESLLVFHQRIHKDPEPCTLCDKIIKPSSLKRHMEQVHGNTSEKQRKRTGLIKAPIACELCGHIVKKKCDLETHMNRYHLKIKPYVCHICSKDFCGKVRLKEHIATHTSDNSCFCSICGKKFANRVCLKMHFRMHTGVAPYACDICGQKFRSSSLMKTHRLKKHLEKTVCCPLCDNMFFMVRDMRHHFKKAHWKNKDGRPFNPEDVKELPKELYYLFEDGRLPKLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00786297;
90% Identity
-
80% Identity
-