Pumb015273.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982928.1:13437806-13441343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.45 39 5.8 0.5 3 23 41 61 39 61 0.91 2 15 1.5 1.3e+02 4.2 3.7 1 19 70 88 70 93 0.94 3 15 0.013 1.1 10.7 3.8 1 23 99 122 99 122 0.94 4 15 0.00024 0.021 16.1 0.7 1 23 124 146 124 146 0.97 5 15 0.012 1 10.8 0.1 1 23 180 202 180 202 0.97 6 15 0.054 4.7 8.7 0.8 3 23 231 252 230 252 0.97 7 15 0.07 6.1 8.4 1.4 1 16 259 273 259 277 0.75 8 15 1.9e-06 0.00016 22.7 0.5 1 23 287 310 287 310 0.92 9 15 0.0004 0.035 15.4 1.8 1 23 319 342 319 342 0.97 10 15 0.13 12 7.5 0.7 2 23 348 371 347 371 0.95 11 15 0.48 42 5.7 0.8 3 23 380 400 380 400 0.96 12 15 0.0051 0.44 11.9 0.1 1 20 405 424 405 427 0.90 13 15 0.00012 0.01 17.1 2.4 1 23 433 455 433 455 0.97 14 15 0.00011 0.0095 17.2 0.9 1 23 461 483 461 483 0.98 15 15 4.9e-06 0.00042 21.4 2.0 1 23 489 512 489 512 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTAGTGATGGGTTCACCGACGCAGCCGGACGGCGCGGGCTGGCTGGACATGGAGCGGCTGGAGAGCGCGCTGGGCCGCAAGCTGACGTCCATAGACTTGGTGGGCGGCATCTTCTGCAGCATCTGTCAGTCGACGTTCGGTAACAAGCGGGACTACGACACCCACTACGTGGACCACAATATTGGCGACGCAGACATAGGGTACACTTGTGTCGTGTGCCGCAAACAGTTCACGGGATACCCCAGCTTCCGCAACCATTGCTACTTAACTCATGTTGCTAAAAACAAGCACAAGTGCATACATTGCtccaaaacattttcaaaacaatCAGTTCTGATCAGTCACATTGATAGTACTCACAATTTCAAATGTGAACCTTGCCAAAAGAAcTTTCCATCCAAAAAGGAACTAACAACGCATCAAATTATTCATGGCAAGGAGAAACCACCGTACCATTGCCAAGAATGTGGGGACACTATCGAGAGTATTGACATGTGCGAGCTGCACATTGACAAACACTGCACCTCTCTGTACTCCTGCCCCGTCTGCAACGAGACCACCAACAACAAACTAGATGCTGCCAAACATCTCACAATCCACTTTGGTGAAGTACTTACGGATGAAGACATTACCACTTCTAAAATTGGCGAGGACTGCTCCATAGACATCCTTGGAGGAGTCCTCTGTAATTACTGTGACGAGTTATTCAAGAATAGACTAGAGTTCGATACACATTACACAACAGAGCATGGAGATAAGCCGCTGGTGTACTCCTGCAACATTTGTGGGAAACAGTATGACAAGTACCATTTGTTTGGCAACCACTGCTACGATCACATGACCAAAGGTAGATTCGAATGCACAGACTGCGGCAAGACGTTCTCGCGGCTGTCGCTGCTGGTGACGCACACGGAGGCGTTCCACTCGGCCGACTCGGCGGAGAAGCCCTTCCGCTGCGGCACGTGCGGCTACGGGTTCAAGTCCGCCAAGCGGCTGTGCGAGCACACGCGCGTCGTGCACGACACCAGTGCCATGCGCTGCACGCAGGACGGCTGCGAGAGGATGTTCGAGTCCCTGAAGGAGCTGCTGTTCCACCAGCGCTCGCACCGGTCGGTGCCGCGCGACAACTGGTGCCGGCAGTGCGGGCTGCAGTTCAGCTCGCTGGCGGCGTGCGAGCGGCACCTGGACGTGCACCGCAAGAAGCACTACGCCTGCCCCGTCTGCCCCAAGAGCTACCGCGAGAAGTACCTCATCCTCAAGCACGTGCCCACGCACTTCGAGTCCGTGCTGCACGTGTGCAAGGTGTGCGGCAAGGTGTTCAAGCTGCGCAGCCGGCTCGTGCAGCACTCCAAGACGCACTCCGACCTGCGCGCGCACAAGTGCAGCATCTGCAGCAAGGGCTTCATGAAAGCCTCCGTGCTGGAGCAGCACATGAACATCCACAACGGGTTCCGCCCCTTCAAGTGCACCGTGTGCCCCAAGACCTTCGCGAGCCACCCCAACTGGTACAAGCACATGCGTCGCGTGCATAACATGCCGTCTAAGGATAACCAAAACACTAAAAAGATTACTGCTCCTGAACCACCCCCCGTTACTGTAATCGATAATAGCGATAGTAAAATGAAAATCGAATCGGGAATCGATTCAACGAGTTCGGAAATGTCCCTAGAGACACACAGTTTTGCCGAGTCGGATGACAGTACCATGGATAGTATTGATCCGACAATCATAGAGAGAGATTGGTGTATCTCGAATGAAAGTTCCATAATTGACAACATAGACAACACTCTTCAATATACAGATATGCTGCCAGTTAGCAGCACTACATTCATTGATTTTGAAATATCTCATGAAGTTGGGCCGATGACGCCTGCAGGCCAGGCGTGGCAGACGGTGCAGGACGGGCAGCTGGGGCAGGTCGGGCAGGAGGCGCTGGCGGGGCTGGCGGGGCCGGCGGAGCTGCTGCAGCAGGCGGGGCTGGGGCCGCAGGCGGGGCTGGTGCCCGACTGCTCGGGGCTGGTGCCGCGCGAGTACGGGCCGGAGTTCAAcgtgggcgcggcgggcggctggTCGGGCGCGGTCATCGACCTGGACGACCACTACCTGCCGCACATCGACCCGCTGCTCACCATCaagccgccgcccgcgccggcgCAGCCCGACCCCTGGGAGCCTCTCATCACCAAGGTATACAGCGTCTTCGAGGACGCCGACCTCAACAGACTCTCCATCATGAAGACCGACATATTCTAA
- Protein Sequence
- MEVVMGSPTQPDGAGWLDMERLESALGRKLTSIDLVGGIFCSICQSTFGNKRDYDTHYVDHNIGDADIGYTCVVCRKQFTGYPSFRNHCYLTHVAKNKHKCIHCSKTFSKQSVLISHIDSTHNFKCEPCQKNFPSKKELTTHQIIHGKEKPPYHCQECGDTIESIDMCELHIDKHCTSLYSCPVCNETTNNKLDAAKHLTIHFGEVLTDEDITTSKIGEDCSIDILGGVLCNYCDELFKNRLEFDTHYTTEHGDKPLVYSCNICGKQYDKYHLFGNHCYDHMTKGRFECTDCGKTFSRLSLLVTHTEAFHSADSAEKPFRCGTCGYGFKSAKRLCEHTRVVHDTSAMRCTQDGCERMFESLKELLFHQRSHRSVPRDNWCRQCGLQFSSLAACERHLDVHRKKHYACPVCPKSYREKYLILKHVPTHFESVLHVCKVCGKVFKLRSRLVQHSKTHSDLRAHKCSICSKGFMKASVLEQHMNIHNGFRPFKCTVCPKTFASHPNWYKHMRRVHNMPSKDNQNTKKITAPEPPPVTVIDNSDSKMKIESGIDSTSSEMSLETHSFAESDDSTMDSIDPTIIERDWCISNESSIIDNIDNTLQYTDMLPVSSTTFIDFEISHEVGPMTPAGQAWQTVQDGQLGQVGQEALAGLAGPAELLQQAGLGPQAGLVPDCSGLVPREYGPEFNVGAAGGWSGAVIDLDDHYLPHIDPLLTIKPPPAPAQPDPWEPLITKVYSVFEDADLNRLSIMKTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784625; iTF_00783783; iTF_00786237; iTF_00785423;
- 90% Identity
- -
- 80% Identity
- -