Pumb026511.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- ZFY
- Assembly
- GCA_963891755.1
- Location
- OY982943.1:7723067-7727923[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0027 0.24 12.8 5.9 1 23 161 184 161 184 0.97 2 18 0.00018 0.016 16.5 0.9 1 23 193 216 193 216 0.97 3 18 0.019 1.7 10.1 0.8 2 23 229 251 229 251 0.97 4 18 0.00043 0.038 15.3 0.8 1 23 260 283 260 283 0.97 5 18 0.00034 0.029 15.6 2.9 1 23 295 318 295 319 0.96 6 18 0.00014 0.012 16.9 0.7 2 23 345 367 344 367 0.97 7 18 0.0015 0.13 13.6 1.2 2 23 377 399 376 399 0.96 8 18 0.081 7.1 8.1 1.1 3 19 405 421 403 424 0.92 9 18 0.00063 0.055 14.8 0.5 2 21 429 448 428 451 0.94 10 18 0.4 35 6.0 2.2 3 23 461 482 460 482 0.93 11 18 0.00029 0.025 15.8 3.5 1 23 487 510 487 510 0.94 12 18 0.00028 0.025 15.9 1.3 2 23 522 544 521 544 0.95 13 18 0.18 16 7.0 0.4 1 23 572 595 572 595 0.92 14 18 1.6 1.4e+02 4.0 0.5 2 23 602 623 601 623 0.87 15 18 0.023 2 9.9 1.8 2 23 629 650 628 650 0.97 16 18 4.8 4.2e+02 2.6 2.0 3 23 658 680 656 680 0.90 17 18 0.021 1.8 10.0 0.1 1 23 716 738 716 738 0.97 18 18 0.089 7.7 8.0 1.9 1 23 744 767 744 767 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATCTAAACATTAAGATTGAATGTGAATTAGAATATGATGAGAAAAAAGAAGTTAAAGTTAAGATAGAAAATGATGATTCAAGAAAGGATCCTACCTCATTTTTACCCGATGAGCCGATGACTTATGaaattaagaagaaaaagaagaagaagaaacggCTGCAAGAAGACCCGTTCAAGGATATAGATGACAAGATGGGTGGCAAGATTGAACCTATGAGTTTGCTGGATCCTGAAGTAAAAATTAAAGTAGAAGACATAGAAGTGGAATTGGATTTTAATGATTTTGGTGACAGTGGCCTGGTGGAAGGCCCCAACAGCGAGGAGAGTCAGCAACCATCCGTGAAGATAGAGCCAAACAACCACGAGGCCGTCCTACTCACCTTCGAGAGTGTCATCAACCAGAATCGACAGCTCGATGGCTCAGAAGTGTACCCCTACAACACCGAACTGCCCATTGAACGTGCCCCAACACACGTCTGCAAAGTCTGTCATCTAGTCTTCCAATCTCAGAAAACACTCCGGATGCACCAGAAGAGGAAACACAAGTCTTTCAGAAAGTCATTCAAACACGTTTGTGATTACTGCGGCATGTCCTATGAAATGAAGAACAGTTTAGTTGCCCATATCAAGAGGAAACATGGCCCGGACTCCTTGCCTGATGACCGCGAAGAAAGGACTTGTGATATATGCGCCCTAGTCTTCAAAGGCATGACGCGGTTAAGGATGCATATGAGAAGGAAACACGGAGCCTTCCAAGAGTCATTTAAACACGTCTGTGACGACTGCGGACTAACCTACGATAAGTACAGAAGTTTGATAGTCCACATACAACGTAAACATTCAAATCATCAGAAACCTGAAATTAATCAATGGTACAACTGCCCCTTCTGTCCTAAGATTTTCACCAAAAGAGAAACTTACGCTAGACACGTGCAAAGAAAACATCACGTGTCAGAAGGTAGCATGAATAAAGACAATCCTGATTATTTGGAGAACTGTAAAAATGAGGAGACTGGCGAGATAACGTGCAAAGAATGCCCTCTAGTCTTTTCTTCGGTGAACTTCTTGAAACTCCACATGAGGAGGAAGCATAATGCGTTGAGGGAAGACTTTAGATTGAAGTGTCGGATTTGTAACTTGTCGTACGACAAGATCGAGAGTTTGAAGAGGCATGTGCGAAGGAAACATGACAAAGGATCGCACTGCGAAGTGTGCAATAAACAGTTCGATACGCGGGAGATGTATCTCAACCACTCACACATAAAGACGATAAAAGAGTGCAATATCTGCGGACTGATCTTCGCGTCACAAGGTGGCTTAGCGAAACATCTAAGATGTACCCACAAGATCGACTCGCCCAAAACTGTCTTCTGCAATCTGTGCAACGAAGGCTTCCACGACAAGCGACAGTTGAAACCGCATTTTATGAAAGTGCATTTAAAAGTATCTTACACCTGTAGATactgcaaaaaagtttttaaagctAAAGAGAGTTATAGACGCCACATATTATTTAAGCACCCTAATGTTAATCATTTTAATGCTCAGATGCAAAAATGTGAACAATGTAGTGAGACCTTTAAGGACGAATTCGATTTATGTCGACACATAGATATTGTTCATGGTCAGGCTGATGACTTGACCAAGGAAGAAAGAGAGAGAATGATAGAAATTAAAAAGGAAGACCAGGATATAAAAGATCATTTCCAGTGCACCAAGTGTCCGGACACATATTTAACTTGGGAACAGCTAAAGTTGCACTACGAAGCCAACCATCACAACGTTGAAGAAACACAGTGTCAGATATGTGGAGAAATTATACCGGGCAACGAGTTACAGAAACATATAAAAAGTCTTCACACGGATACGGAAATGAAGTGTAAATACTGTGAATTTAAGACGAATATTAGAGTTAGTTTGACACAACACATGTTGAGGCATAAGAACGCTGAAACGATACATTGTGACTACACCggttgtaaatataaaacgttCTACGAAGGTGCTATGGAGAAGCATAAGAGGAAACATGCGGATCAAGGAGTCAAACTCCAATGTACGCAATGTCCCTTCCAAACTATGAATAAATACATCCTGAAATACCATGAGGAAGCTCATGAAACCGGGAAGAAAAGGTACATGTGTGATCAATGTGACTACGCAACGATACTGCCCGCTAACCTTGTACAACACAAGTACAAACACTCAACGGAGAAGCGGTTTAAATGTGAAGTTTGTCCGTTTGCAACGAAATATAACACATCACTGAGGTTCCATGTTAGGAAAAAACACTGTGATCTCCCAACATTCAGTTAA
- Protein Sequence
- MADLNIKIECELEYDEKKEVKVKIENDDSRKDPTSFLPDEPMTYEIKKKKKKKKRLQEDPFKDIDDKMGGKIEPMSLLDPEVKIKVEDIEVELDFNDFGDSGLVEGPNSEESQQPSVKIEPNNHEAVLLTFESVINQNRQLDGSEVYPYNTELPIERAPTHVCKVCHLVFQSQKTLRMHQKRKHKSFRKSFKHVCDYCGMSYEMKNSLVAHIKRKHGPDSLPDDREERTCDICALVFKGMTRLRMHMRRKHGAFQESFKHVCDDCGLTYDKYRSLIVHIQRKHSNHQKPEINQWYNCPFCPKIFTKRETYARHVQRKHHVSEGSMNKDNPDYLENCKNEETGEITCKECPLVFSSVNFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHIKTIKECNICGLIFASQGGLAKHLRCTHKIDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPNVNHFNAQMQKCEQCSETFKDEFDLCRHIDIVHGQADDLTKEERERMIEIKKEDQDIKDHFQCTKCPDTYLTWEQLKLHYEANHHNVEETQCQICGEIIPGNELQKHIKSLHTDTEMKCKYCEFKTNIRVSLTQHMLRHKNAETIHCDYTGCKYKTFYEGAMEKHKRKHADQGVKLQCTQCPFQTMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- -
- 80% Identity
- -