Basic Information

Insect: Pyrrhia umbra
Gene Symbol: -
Assembly: GCA_963891755.1
Location: OY982947.1:3940202-3944548[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.12 10 7.7 0.1 3 23 42 63 42 63 0.93

2 17 5.3 4.6e+02 2.4 3.7 2 23 86 108 85 108 0.96

3 17 0.0016 0.14 13.5 0.9 1 23 113 136 113 136 0.94

4 17 0.001 0.09 14.1 3.4 1 23 139 162 139 162 0.97

5 17 0.0012 0.1 13.9 0.5 2 23 169 191 169 191 0.93

6 17 0.0021 0.18 13.2 0.9 2 23 199 221 198 221 0.96

7 17 2.5 2.2e+02 3.4 0.7 1 23 226 248 226 248 0.93

8 17 1.6e-08 1.4e-06 29.3 0.6 1 23 254 276 254 276 0.98

9 17 0.0091 0.8 11.1 1.4 1 23 356 378 356 378 0.99

10 17 4.7 4.1e+02 2.6 0.0 2 23 404 426 403 426 0.90

11 17 0.23 20 6.7 0.4 3 23 450 471 448 471 0.93

12 17 0.00016 0.014 16.6 0.6 3 23 479 500 478 500 0.98

13 17 1.4e-05 0.0012 20.0 1.8 1 23 505 528 505 528 0.95

14 17 0.0059 0.52 11.7 1.9 1 23 534 557 534 557 0.94

15 17 4.9e-05 0.0042 18.3 1.6 2 23 564 586 563 586 0.95

16 17 0.015 1.3 10.5 1.3 1 23 592 614 592 614 0.94

17 17 0.043 3.8 9.0 0.7 1 23 620 643 620 643 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.12	10	7.7	0.1	3	23	42	63	42	63	0.93
2	17	5.3	4.6e+02	2.4	3.7	2	23	86	108	85	108	0.96
3	17	0.0016	0.14	13.5	0.9	1	23	113	136	113	136	0.94
4	17	0.001	0.09	14.1	3.4	1	23	139	162	139	162	0.97
5	17	0.0012	0.1	13.9	0.5	2	23	169	191	169	191	0.93
6	17	0.0021	0.18	13.2	0.9	2	23	199	221	198	221	0.96
7	17	2.5	2.2e+02	3.4	0.7	1	23	226	248	226	248	0.93
8	17	1.6e-08	1.4e-06	29.3	0.6	1	23	254	276	254	276	0.98
9	17	0.0091	0.8	11.1	1.4	1	23	356	378	356	378	0.99
10	17	4.7	4.1e+02	2.6	0.0	2	23	404	426	403	426	0.90
11	17	0.23	20	6.7	0.4	3	23	450	471	448	471	0.93
12	17	0.00016	0.014	16.6	0.6	3	23	479	500	478	500	0.98
13	17	1.4e-05	0.0012	20.0	1.8	1	23	505	528	505	528	0.95
14	17	0.0059	0.52	11.7	1.9	1	23	534	557	534	557	0.94
15	17	4.9e-05	0.0042	18.3	1.6	2	23	564	586	563	586	0.95
16	17	0.015	1.3	10.5	1.3	1	23	592	614	592	614	0.94
17	17	0.043	3.8	9.0	0.7	1	23	620	643	620	643	0.89

Sequence Information

Coding Sequence: ATGCGGGACTGTGAAGCACTCAAAGAACATACCACAAAACATGCAGTAGATCTGGACAGTTTTATTTCAACAAGAATCATATCCAAAGATATTCCTGTCAAAATTGATGTTAGTAACATGGGCTGTAAGGTCTGCCACGAACCTTTGAAAGATTTAGAAGAGCTGGTTTCTCATATAGTATTGGTTCATGAAGAAGAGTATGACGTGTCCACGGGAGTTTGCGCCTTGCCTTTCGTTTTGAGCAAGGATATAATGCAATGTGTATTATGTGACAATCGGTACGACAATTTCACTTGCATGATCAGCCATATGCACAAAGACCATGTAAGCCATTCATTTATGTGCCAGATTTGTGGTTTAAGCTTTATAAGCACGATTCGTCTCAAAAGACACTTTAATAACAGCCACGTCGGGTACAGGTGTACGATTTGCGGTAAAATGTTCAATGCGTCCCATAGGATGGAGAAGCATAAGCAAAAAATGCACGGTCAAGCGAAGAACAATGAATGTAATCTATGCAGCTTGAGGTTTGAAAGCCAATACCAGCTAAAAGTTCATTTAGGAAAGATGCATAATGTGGAAAAATATAGGATTAAATGCGAACAGTGTCCGAAAATTTGCACGACCAAAGGTGCTATGTTGTTACATATCCAGTCGAGACATTCCGATATGAAATTCGAGTGCGACTTATGTAATTACAAGACTGGGATTAAGTGGTTGATAACGTTGCATAAGAAAAAGCATTTTGGAGACCGCGATTATGCTTGTAGCATTTGCGAGAGGTCATTCCGGAGGTCTAGCAACTTGAGGGCTCATATGAAAGTACATTCCGGCGTTTCTGGACGTGTTTGCAGGTTTTGTAGAAGAGGAGAACGCAAGGGTGGCCAGGATACGACACACACGCGGCCCGACAATCAACGTGACAAAGACTACGAAGACGCCATAACTCAGTCCACCAGCAAACCAGCGCTAACCGCCAAAGACAAGAGGAATATCATGAGAAATAACGTCGTTCAAGTCCTCACGAAATCTACCGTCATGCCATTCCGCTGGCTCAAAAGTTCCTACAGATGTTTCTATTGCTACGATATCTTCCAGGAAGCTTCCGAGCTAAAAAGCCACCAGCAAACACACACGGGTAACGCGATCAAAGTTCAAGCTATGAAAAATTATTGGGAACCGGTCGTCTATATAGATATTTCTGATCTCTCCTGCAGTCTTTGTCCAGATAAAATCACAGATCTATACGATCTGGTTgaccatttaattttaatgcatGGGGTGGAGTATAATAAAGATGTAGGGATTTGCATGGTGGCTTTTAAActtgataattttaatgttagcTGTCTAGCCTGTGGCGCTAGTTTTTACACCTTTGGGCCTTTACTTCATCATACGAACAAAGATCATAAAGGCACTTCAGCTATCTTATGTGACGTGTGTGGCCAGCACTTTAAAGATGCCAACCTTCTTAGGCTACACGTGAAAACGGTTCATGAAAACGCATTATACCTTTGTACGGAATGCGGAGAAAAATTCGATTCGAAATCCAAGCTGAAGACGCATCAGAAAAATAATCACGAtatagaaaagaaatataagtGCTCGGATTGTTCTGAGGTTTTCCAAAGCCATTACAAGAGGTCCAGACATATGGCCGCTGAACACAAAAACCGGCAAGAAATCAAATGCCCCCATTGTCCAAAAACTTTTGTGTTTAGAAGTATGATGATGACGCATTTGCGAGACTCCCATCTTAAGTTCAGGAACCATGTGTGTGGGGTTTGCGGATGGAAGGCTTTCAACAGTAATCGTTTAAAAAATCACATGTATAAACATAGTGGAGAGAAGAACTTCAAATGTGATGCTTGCGAAAAAGCGTTTACCACGAAAAAGATTATGAGGGCTCATTTTGCGAGAATGCACAAGAATCCACATCCTGCTATCATGCAATATGATAATCCTTATGTGGGGCAAGTTTAG
Protein Sequence: MRDCEALKEHTTKHAVDLDSFISTRIISKDIPVKIDVSNMGCKVCHEPLKDLEELVSHIVLVHEEEYDVSTGVCALPFVLSKDIMQCVLCDNRYDNFTCMISHMHKDHVSHSFMCQICGLSFISTIRLKRHFNNSHVGYRCTICGKMFNASHRMEKHKQKMHGQAKNNECNLCSLRFESQYQLKVHLGKMHNVEKYRIKCEQCPKICTTKGAMLLHIQSRHSDMKFECDLCNYKTGIKWLITLHKKKHFGDRDYACSICERSFRRSSNLRAHMKVHSGVSGRVCRFCRRGERKGGQDTTHTRPDNQRDKDYEDAITQSTSKPALTAKDKRNIMRNNVVQVLTKSTVMPFRWLKSSYRCFYCYDIFQEASELKSHQQTHTGNAIKVQAMKNYWEPVVYIDISDLSCSLCPDKITDLYDLVDHLILMHGVEYNKDVGICMVAFKLDNFNVSCLACGASFYTFGPLLHHTNKDHKGTSAILCDVCGQHFKDANLLRLHVKTVHENALYLCTECGEKFDSKSKLKTHQKNNHDIEKKYKCSDCSEVFQSHYKRSRHMAAEHKNRQEIKCPHCPKTFVFRSMMMTHLRDSHLKFRNHVCGVCGWKAFNSNRLKNHMYKHSGEKNFKCDACEKAFTTKKIMRAHFARMHKNPHPAIMQYDNPYVGQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01535182;
90% Identity: -
80% Identity: -