Pumb028320.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- Kr
- Assembly
- GCA_963891755.1
- Location
- OY982946.1:6588327-6605655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0001 0.0088 17.3 2.6 1 23 285 307 285 307 0.98 2 17 0.12 11 7.6 1.3 1 23 314 336 314 336 0.93 3 17 0.51 45 5.6 0.1 1 23 340 363 340 363 0.97 4 17 0.043 3.8 9.0 4.9 1 23 370 392 370 393 0.96 5 17 2.4e-06 0.00021 22.4 0.4 2 23 399 420 399 420 0.98 6 17 4.3e-05 0.0037 18.5 4.7 1 23 426 448 426 448 0.99 7 17 0.00065 0.057 14.7 0.6 1 20 454 473 454 475 0.95 8 17 1.2 1e+02 4.5 0.1 1 23 539 562 539 562 0.96 9 17 3.7 3.2e+02 2.9 0.0 1 16 568 583 568 585 0.89 10 17 1.2 1e+02 4.5 0.1 1 23 591 614 591 614 0.96 11 17 3.7 3.2e+02 2.9 0.0 1 16 620 635 620 637 0.89 12 17 1.2 1e+02 4.5 0.1 1 23 643 666 643 666 0.96 13 17 3.7 3.2e+02 2.9 0.0 1 16 672 687 672 689 0.89 14 17 1.2 1e+02 4.5 0.1 1 23 695 718 695 718 0.96 15 17 0.0048 0.42 12.0 0.0 1 23 724 747 724 747 0.95 16 17 5.3e-06 0.00046 21.3 1.0 1 23 756 778 756 778 0.98 17 17 4.2e-05 0.0036 18.5 0.4 1 23 784 807 784 807 0.96
Sequence Information
- Coding Sequence
- ATGGAAACATTGAGTATAGATCACGAAGAGgacataaaatatgattttgaaCCAGTTAAAGTCATATGTCGGTGCTGTTTAACAACAGAACGGCGAATGTACAATGCTACAATGTTTGAAGCGTATTTTAAAGATCTCGCTGGATTAAACGTGACGGAATCAGACGGTCTGCCGCAGTGGTTGTGTTTTGAATGCTGTGCGCTCCTTCAGAAGAGTGTGAAGTTCAAACACAAGATGTTACGAGCTCATAACATGCTTTACGAGTACCTCACACGCTGTGCTCCGTTTCCTATCGAGGCCCAGGATGAGGAGCTGTCAAAGTATGCCAGTCCCCACCTCAGTACGACGAGTGTGCTTACTATTGACATCGTTGGCAAGGGGAAGGCTGGCTACCAGCAGGTCTTAGAGCATGAAAAATTACTACACACATCGGGATTGGATGAGATTGACATAAATTTGCTTCGTAAAATAGAGAACGATGACGTGAAAGTGGAAAATAGTTTCTCTGACTACGAGGATAACATCACTTTGGAAGAAATTAGATCGGTAGCAACAAAGATATCAGATGATGATATACAAACATTACTACAAGAGTCAGGGCAGTTAGATCTTAATATCAAAGATGAACCTACCCCTAAGAAGACCAAGAAATCGAAGAGCAAACCAGTCAAAgtcaagaagaagaaaaagaatacGGAAACAGCTTCTACGGAAGAAAGTCAACCGGTAACCAAGTCTTCAATAAGAAAAACTATAGAGTTAGACCCGGCCAAGATAAGGATCGTCGCCTTGAACCCTGAGGAGCAAATCAAACAGAGAGAggAAGAAAGTAAGGCCGGTCTCAAGTTTCCGTTTCAATGCAATCTATGTTATAAGGGCTTTAATTTTGAGTCGAAATTACAAAATCATATGAGCAAGCATAGTCcgTCCCGTGGTCCCTACGAATGTAAAATGTGTCACATGTACCTGCCCACGTCGTACAGTTTCAACGTGCACTCCGTGATACACAACAGGCGGTATGAATGCGTGGCCTGCGGCAGACGGATGATAGACCGCGCCTCTATCATAGACCATTATCGAACACAACACGAAGGATTTTTAAGTTTATACACTTGCAACCTTTGCGGGAAAGTATCCAACAATAACAAAACGCATCGAGGACATATGCGGAACCACCATAGTGGGGATAGACCGAAATGCGAGCAATgtggaaaaacatttattaacaaAGACTCCTTGGTGGAACATCAACAAATACATCAAGGCATCAAAAACTATGAGTGCTCCGTATGTAACAAGCGGTTTAGGACCAGAACACAGATTAAACATCACCAGTTGACACACACAGATGTCAAGGAATATTATTGCGTGGAGTGCGACGTCAGGTTTAAATCGGCACACAGTCTCAGACAACATCTTGTAAAGAGCTTAAAGCATCGAGATAAGCAGAGTTTTAATTACCGTACCGATACTCTACTGACTGCACAGTTACCGTACCGATACTGTGCGGCGAGTGCGGCGCGGGGCTGGCCTCGCGCTCCTCGCTCGCCAGCACGATACCGTACCGGTACTCTACTGATAGTGCACAGATACCGTACCGATACTCCACCTAGGTTCGAGTGCGCGCGCTGCCCGGCGCGCTTCGGGTGCGCGCGCTCGCTGGCGGCGCACGCGCGCGTGCAGCACGAGGGCGTGCGCGCGCACGTGTGCGGCGAGTGCGGCGCGGGGCTGGCCTCGCGCTCCTCGCTCGCCAGCACGATACCGTACCGGTTCGAGTGCGCGCGCTGCCCGGCGCGCTTCGGGTGCGCGCGCTCGCTGGCGGCGCACGCGCGCGTGCAGCACGAGGGCGTGCGCGCGCACGTGTGCGGCGAGTGCGGCGCGGGGCTGGCCTCGCGCTCCTCGCTCGCCAGCACGATACCGTACCGGTTCGAGTGCGCGCGCTGCCCGGCGCGCTTCGGGTGCGCGCGCTCGCTGGCGGCGCACGCGCGCGTGCAGCACGAGGGCGTGCGCGCGCACGTGTGCGGCGAGTGCGGCGCGGGGCTGGCCTCGCGCTCCTCGCTCGCCAGCACGATACCGTACCGGTTCGAGTGCGCGCGCTGCCCGGCGCGCTTCGGGTGCGCGCGCTCGCTGGCGGCGCACGCGCGCGTGCAGCACGAGGGCGTGCGCGCGCACGTGTGCGGCGAGTGCGGCGCGGGGCTGGCCTCGCGCTCCTCGCTCGCCAAGCACGCGCGCGCAGTACACCgcggccgccgcccgccgccgcgacACGTCTGCGACACCTGCGGGAAGGCCTTCCGGGGTAAGAGCGTGCTGACGAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGAGTGCGGCGAGTGCGGGCGACGCTTCACGCAGCGCACGGCCATGCGCACGCACGTCAAGCTCGTGCACCTCAAGCTGCGCCGGACCGCTAAGGTGAAGCCGGAGCTTCCTATGCAGCCTCCGTCCCCCAAACTGGACGTGTTCAAGCCGGAACCCTTGCTGGAGCCCTGGAGACAGCCTTGCGATGTCTACTTCCACGTCACAGCGGGCCCCTGA
- Protein Sequence
- METLSIDHEEDIKYDFEPVKVICRCCLTTERRMYNATMFEAYFKDLAGLNVTESDGLPQWLCFECCALLQKSVKFKHKMLRAHNMLYEYLTRCAPFPIEAQDEELSKYASPHLSTTSVLTIDIVGKGKAGYQQVLEHEKLLHTSGLDEIDINLLRKIENDDVKVENSFSDYEDNITLEEIRSVATKISDDDIQTLLQESGQLDLNIKDEPTPKKTKKSKSKPVKVKKKKKNTETASTEESQPVTKSSIRKTIELDPAKIRIVALNPEEQIKQREEESKAGLKFPFQCNLCYKGFNFESKLQNHMSKHSPSRGPYECKMCHMYLPTSYSFNVHSVIHNRRYECVACGRRMIDRASIIDHYRTQHEGFLSLYTCNLCGKVSNNNKTHRGHMRNHHSGDRPKCEQCGKTFINKDSLVEHQQIHQGIKNYECSVCNKRFRTRTQIKHHQLTHTDVKEYYCVECDVRFKSAHSLRQHLVKSLKHRDKQSFNYRTDTLLTAQLPYRYCAASAARGWPRAPRSPARYRTGTLLIVHRYRTDTPPRFECARCPARFGCARSLAAHARVQHEGVRAHVCGECGAGLASRSSLASTIPYRFECARCPARFGCARSLAAHARVQHEGVRAHVCGECGAGLASRSSLASTIPYRFECARCPARFGCARSLAAHARVQHEGVRAHVCGECGAGLASRSSLASTIPYRFECARCPARFGCARSLAAHARVQHEGVRAHVCGECGAGLASRSSLAKHARAVHRGRRPPPRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFECGECGRRFTQRTAMRTHVKLVHLKLRRTAKVKPELPMQPPSPKLDVFKPEPLLEPWRQPCDVYFHVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -