Pumb029014.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982947.1:6349798-6358777[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0038 0.33 12.3 1.6 1 23 215 238 215 238 0.96 2 26 0.0059 0.51 11.7 2.4 2 23 244 265 243 265 0.95 3 26 0.35 30 6.2 3.0 2 21 269 288 268 289 0.93 4 26 0.012 1 10.8 0.8 2 23 331 353 330 353 0.95 5 26 0.0043 0.37 12.2 0.5 1 23 386 408 386 408 0.98 6 26 0.018 1.6 10.2 3.4 1 23 414 437 414 437 0.97 7 26 0.0071 0.62 11.5 1.0 1 23 446 469 446 469 0.96 8 26 0.023 2 9.9 8.5 1 23 479 501 479 501 0.98 9 26 3.8e-06 0.00033 21.8 0.8 1 20 623 642 623 644 0.94 10 26 0.043 3.8 9.0 0.2 1 23 675 698 675 698 0.95 11 26 0.00054 0.047 15.0 0.2 1 19 703 721 703 725 0.95 12 26 0.26 22 6.6 7.0 1 21 728 748 728 749 0.95 13 26 8.9e-05 0.0078 17.5 0.4 1 23 763 786 763 786 0.95 14 26 8.4e-05 0.0073 17.5 1.7 1 23 792 814 792 814 0.98 15 26 6.6 5.8e+02 2.1 0.1 6 23 825 842 825 842 0.95 16 26 3.9 3.4e+02 2.9 1.5 1 23 848 871 848 871 0.75 17 26 0.00025 0.022 16.0 1.0 2 22 997 1017 996 1020 0.89 18 26 0.19 17 7.0 0.0 3 23 1024 1045 1023 1045 0.95 19 26 0.046 4 8.9 1.0 1 23 1050 1073 1050 1073 0.95 20 26 3.9e-05 0.0034 18.6 0.5 2 23 1079 1100 1078 1100 0.96 21 26 1.8 1.6e+02 3.9 1.2 2 20 1104 1122 1104 1124 0.91 22 26 5.7e-06 0.00049 21.2 1.2 1 23 1150 1173 1150 1173 0.95 23 26 0.00057 0.049 14.9 0.5 1 23 1179 1201 1179 1201 0.95 24 26 0.13 11 7.5 0.1 1 23 1207 1229 1207 1229 0.97 25 26 0.0066 0.58 11.6 0.3 1 23 1235 1258 1235 1258 0.94 26 26 0.00029 0.026 15.8 0.9 2 23 1265 1287 1264 1287 0.94
Sequence Information
- Coding Sequence
- ATGAGCCGGCAAGTGGATATAAAGGCTTTAGTGTCCCATATAGTGCGTGGAGACGGTTCAGACAGATGCCGAATATGCATGGGCGATACGAGCGAGGGTCAAGTTCATTTAGAAGACACAGTTATGATGGATGGAGACAAAGCTGTAACGCTTGCTGAATTACTAGAAGTCATTACAGGAGTCGagGTGCGGCTGGACGATGACCTGCCTCTAGGACTGTGCTCCCTCTGCTCAGTGTCAGCCCTCCAAGCTGCTGACTTCAGAACCCAGTGCCGGAGAGCTGCCTCACAATGGGAGACCACAGTCGAACTCCTAAGCAGCATACCAAAGCACACAGACTTTGTAAACAACATTGTAGCTATACTCACTGAAAATACTATCTGTATCACTAAGCAGGAAAAAGAGAAAGAGCAGGAGAGCACACAACCACCGAAGTTGGTAAAAAAGAGAACTAGATGCGAGAATGTCAAAAGTACTAAATGTCAGTGCCCGTGCTGTGGCAAACGATTCTTGTATGCCCAACATTTGTGCCAACATTTGAAAGAGTCGTCCAACAACCAACGTGCGTGCCACATATGTGCTCAAATCATGACTAGACAGGAATTGATATCGCATCTAATCGACATACACAAACGAGAGCCTTATGACTGTAAAAAATGTCCAGCTATGTTTCGTACATACATGCAGTATAAAACGCATCTCACTAAAGCCCATGCGTCTGGGGCTTGCACTTGTGGTGAATGTGGTCGCAACTTCCAAAGCCAACACGCTTATTACGCCCATCTGTCAGTCCACACGCCAAAAACATGTCCTGGTTGCGATGAGCTATTCAGAAACCAGAAATGTTACCACTACCACGTCAAACGCTGCTGTAATCTCGACAAAACACGTCTAGACACTCATAAAACCAAAAACAAAGTGACAATAACAGtcaaaaagaagaataaaaacatcaaAGTCGGTATGCGAGGGAGTGCAGACTCAGAATGCATTTGTGACTACTGCAAAAAGAAATTTGCTGGAAAGAAATTCGTGGCTGCACACATACAAATAGTACACATGAAGAATACTCATAGACCTTGTATTTATTGCGGGAAGTTACTGGCAGCGGCTCACATGACCACTCACGTCAAAAAGCACGAATCGACTGAGTCGTTTCAATGCGGCCATTGTGGTATTgttcttaaaactaaactaggATACATACAACACGTTCGTTTACACACAGGTGAAAGACCTTACAGTTGCAAATTTTGCGGCGAATCTTTCTCAGCGTCTTCTAGAAGATCAGAACACATAAGAAAGTGTCATAGAGATTCGGAAATCGTTCTGAAGCATGCGTGCGAGTTCTGCCCAGCAAGGTTCAGACTACCGTATAGGTTGAAAAAGCATGTGAATACAGTGCATGGTGAAGGGAAAGAGCAGTTGATGCAGTTTGAGTGCAATGAATGCCATCAGAAATTTAGTAGTTGTCGGGGGCTGTTGCATCATAGTAGGAAGCACCAGGAGTGCGAAGGTCCTGCTAGAGTTCCAAGGCTGAAGGAGATGGAGATGGACCCCGCGCTCCCCAGCAGCTTATGCTGGAGCTGTTCCGACGACACCCTGGCCGCCATTAACTTCAAGAACCTCTGTGCGCAATCCGCACACCATTGGACAGAGGCATCGAACTACATATCCCAGGTTTACCCTCCTACTGAACAAGATAAGGCTTACTTCATCTTTTATAACCAAGAGAAAACTATAGTAAGAGACCAAATTGACAGCGTCCCAACCATAAAAGATGCTGTAAATAGATTAAACATGAAGTACGAGGTCGCGCTAGATAAACCGCAGAAGCCTAAACGATTTTTAGGCCTGAAAGTTGCCTGCAAGTGTCCAGATTGTGGTAAAAAATTCTCAACACCTGATACTTTGAACCAGCATCTCGGCAACTCGCTGAAACGGGCCTGTCGTGTGTGCTGTACCGTCATGAACAAGAAAAAAATGGCCAATCATTTGTTGACGCAACACAAAATACATTACTACGAATGCAGTATGTGTAACAAATTGTTTGAAGCCGAAATACTTTTGAGACAGCACGTTAAAGAGTCACACGAGAAGCAAGCTTACTCGTGCAATAATTGTGGGAAGAGCTACATAAATGAGCGAGCATTGAGAGCGCACGCACCTTACCATTCGCTATTCCACTGCCCTTCTTGCAACTTAAGCTTCGAAAACAACAAATGTTTCAAACACCATCAGAAGCAGTGCAAATATGCAGACCGACAACCTGAAGAGTTCACGTACTTTAGTTGTGACTACTGCGGCGTCTCGTATAACAGGAAACCGTCGTTACGAATTCATATAATTCAAAAGCATCTAAACGTTTTGCCGTACGTTTGCCAAACTTGCGGCAAGAGGACCTCCACGTTGGCCCATTTGAGGTCCCACGAGAAAGTTCATAAaacagaaagaaaaatatttcagtgttgtTGCGGCGCTAAATTGCGTACCGAAATAGGTTTTCAATTACATCAGAGGATTCATACTGGGGAGCGTCCTTATAAGTGCGAACATTGCGGAGATAGATTCCTATCTGCTTCTAGACGACTAGACCATGTCAAAAGACGTCATAGAGGAGCGAAGGACTTGAAGCACGGTTGTGAAAAATGCTCGGCTCGTTTTatGAAAGAGGAATCTCTGATACCAGTAGGCGCGTGCGTGACCTGCGCTAGCACCGCCCTCGCAGCCCAAGAGTTCCGCCTATTCGTCAGAAATTCAGAAAAGATATGGGGAAAAGCCCTAAATAACCTCTCAACCTTGCCAAACGCAGCCGCCCCTCCAGTCAAATCTGTTTGCGCATTCATCAAAACTTCAGACCTCACGATACAAACCTTCAAAGACTACAACACTAGTGACGCCAAAACGATTTTAAATCGATTAAAAAATCGAGTCGCTAAAAAGCCGGTTGATAGGAAACCTAGAGGGGCGCGTACTGGGCCGTCTTGCAGCTGTCCTGATTGTGGCAAAAGCTTCCTTAGTCCTTACTACTTGAATATGCATTTGCGAAACAGTGGGCATAAGGAGGCCTGTCTTATCTGCGGCTCGGTCTTCGTCAGAGGGAAAGAAATGCAAGACCACTTATCTTCCGTCCACAATGAGATCGTATACTTATGTAAAAAGTGTCCGATCCTATGCCCTAGTGAGGTACAGTTGAAAAAACACGTAAAAAAAGCTCATAAAACCGGCGCTTTGACGTGTACTGACTGTGGTCGGACGTTTCCTAGAAATGCTTCCTTTGAAAGCCATTCGCAAATGCACGCAGTTAGAACCTGTAGGGCGTGTGGAGTACAATTCACCAATCGAGGCTGTTACAGAGAGCATAGGTCCCAATGCGAACCAGATGCTAAGCCTAACGCTCAGAATATGCCCCGAAATAGACGCTCTAACATCCGGGACCCCGCGACCTTTACCTGCGACCATTGCGGCAAAACTTACAACTCTAGACCTCAACTCAAGAACCATATTCTCTGGATACATATGGATATACGACCTCATCAGTGTCAGTGGTGCGGAAAGAGGTTTTACACCCCCGCGCGCTTGGCTGAACATACCGTTGTCCATACTCGCGTTCGAAATTTCGAATGTGACATTTGTGGCGCGAAATTAGTTTCCAAAATGGCCGCCGTGTACCACAGACGAAGGCATACTGGCGAAAGGCCTTATGAATGCGAGGATTGCGGGGAGAAGTTTATTTCGGCTTCGCGTAGATCGGAACATGCTAAGCGTAGACATAATAAAGGATTTAGGCTGCCATGTTTAAAATGCCCAGCTAATTTCGTAAGGAAACATGAACTCAAAAAGCATATGGATAAGGCCCATAGAGGACATGAAATTGACAGTATTATATCGTGGCCATAG
- Protein Sequence
- MSRQVDIKALVSHIVRGDGSDRCRICMGDTSEGQVHLEDTVMMDGDKAVTLAELLEVITGVEVRLDDDLPLGLCSLCSVSALQAADFRTQCRRAASQWETTVELLSSIPKHTDFVNNIVAILTENTICITKQEKEKEQESTQPPKLVKKRTRCENVKSTKCQCPCCGKRFLYAQHLCQHLKESSNNQRACHICAQIMTRQELISHLIDIHKREPYDCKKCPAMFRTYMQYKTHLTKAHASGACTCGECGRNFQSQHAYYAHLSVHTPKTCPGCDELFRNQKCYHYHVKRCCNLDKTRLDTHKTKNKVTITVKKKNKNIKVGMRGSADSECICDYCKKKFAGKKFVAAHIQIVHMKNTHRPCIYCGKLLAAAHMTTHVKKHESTESFQCGHCGIVLKTKLGYIQHVRLHTGERPYSCKFCGESFSASSRRSEHIRKCHRDSEIVLKHACEFCPARFRLPYRLKKHVNTVHGEGKEQLMQFECNECHQKFSSCRGLLHHSRKHQECEGPARVPRLKEMEMDPALPSSLCWSCSDDTLAAINFKNLCAQSAHHWTEASNYISQVYPPTEQDKAYFIFYNQEKTIVRDQIDSVPTIKDAVNRLNMKYEVALDKPQKPKRFLGLKVACKCPDCGKKFSTPDTLNQHLGNSLKRACRVCCTVMNKKKMANHLLTQHKIHYYECSMCNKLFEAEILLRQHVKESHEKQAYSCNNCGKSYINERALRAHAPYHSLFHCPSCNLSFENNKCFKHHQKQCKYADRQPEEFTYFSCDYCGVSYNRKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLRSHEKVHKTERKIFQCCCGAKLRTEIGFQLHQRIHTGERPYKCEHCGDRFLSASRRLDHVKRRHRGAKDLKHGCEKCSARFMKEESLIPVGACVTCASTALAAQEFRLFVRNSEKIWGKALNNLSTLPNAAAPPVKSVCAFIKTSDLTIQTFKDYNTSDAKTILNRLKNRVAKKPVDRKPRGARTGPSCSCPDCGKSFLSPYYLNMHLRNSGHKEACLICGSVFVRGKEMQDHLSSVHNEIVYLCKKCPILCPSEVQLKKHVKKAHKTGALTCTDCGRTFPRNASFESHSQMHAVRTCRACGVQFTNRGCYREHRSQCEPDAKPNAQNMPRNRRSNIRDPATFTCDHCGKTYNSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGFRLPCLKCPANFVRKHELKKHMDKAHRGHEIDSIISWP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -