Pumb027034.2
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982944.1:6303945-6306340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.67 59 5.3 0.1 6 21 218 233 218 234 0.95 2 13 0.00017 0.015 16.5 0.6 2 23 260 281 259 281 0.97 3 13 0.0048 0.41 12.0 1.6 2 23 295 316 294 316 0.96 4 13 7.1e-05 0.0062 17.8 2.5 1 23 327 349 327 349 0.99 5 13 2.9e-05 0.0025 19.0 2.0 1 23 357 380 357 380 0.97 6 13 0.00032 0.028 15.7 0.1 2 23 387 408 386 408 0.95 7 13 4.3e-05 0.0037 18.5 5.0 1 23 414 436 414 436 0.98 8 13 3.6e-07 3.1e-05 25.0 1.2 1 23 442 464 442 464 0.96 9 13 2.8e-05 0.0025 19.0 0.8 1 23 470 492 470 492 0.98 10 13 1.2e-06 0.0001 23.4 0.2 1 23 498 520 498 520 0.98 11 13 2.5e-05 0.0022 19.2 0.4 1 23 526 548 526 548 0.99 12 13 4.6e-05 0.004 18.4 2.2 1 21 554 574 554 576 0.96 13 13 4.5e-06 0.00039 21.5 1.8 1 23 582 604 582 604 0.98
Sequence Information
- Coding Sequence
- atggaAATAAGTGTTCAAACATTCGACAGAATATGCCGCGTCTGTTTAATAGAATGTGCCGACATGAAATCTTTATTTACGAAAATGGACGACGGAGATCGTAACTTGTTTGAACTGCTAGCATTTACAgctaatattaatgttaaattgGAGGATGATCTGCCTAAACAGGTTTGTGGTGAATGTGAGTCGGTTATGTGCAAGGCTGATGCATTCAAACGTCGGTGCCTGTACTCAGACACGATATTAAACAACATCTACGAAAACTCCGTAAACAATGGCGATCCGTCGATTATTGACGAAAAATGCTCCATAAAAGCCGAAAACGATGATATAACGCAAAAATTAAGCAGCTACGTTAGTTTTCGATCTTGtaatatagaaaataatagtCCACAGAACAGTattgataagaaaaatattttgtttcaagaCGCATCAAGTTACGCCGCTGACACTAGTTTATACAAGCTTAATGACTCTAAAGTACCTGAAAATACTGGAAACACCGTCAAAGAAGAGATCTCGTTAAATTTCAATGATGATATAGATTTTTCAGATCATTTTGACGACGGAACCCAATGTGAAACAACTCCATTGGAATTAAAAGAGGAACCATTGAAGATCGAAGGTAAGACTTACTCTTGCTGCTGCGGACAAACATTTGacttaaaagataaatataaaaaccatTTGAAACTCAAAAACTGTAACAAgtacaagaaaatattgaaGAATGTTGATAAAAGCAAATTAATTCCCATTAAAAACAAGATTGAATGTGTTGATTGTCACCGCAAGTTCAGTACTCCGAACGCTTGGAGTTTACATCAACGTGTACACCAAGACAAACGATTGTCAGACAAAAAATCATCCTTATTAATTTGCAAATTCTGCTTATGCGAGTTTAAATCGGAGGCTTCTTTAGCAACTCACATACGAAAACACGAGAAAACCGTTAACAGTAAGACAGAAACATACCAATGCTCATTTTGTTTACGTAAATTTAAGAACAAGACATCTTTATCAGCTCACATACTACGCCACGAAGAAACTGACCGTATTAAACATGTTTGTAAAGTGTGTAAAAGGGAATTTAAGTACAAAGCGTATTtagaaaatcatattttaacaatgcattctaaaaaaaatggtataagTTGCGAAGTTTGCGGGCAGAGTTTTCCTAATGAGGAAAGCTTAGAATTACATAAAGATAGTCACAAGAATGAGAAGAAGCATCGGTGTACGGTCTGTAATAAAGCATTTGTTATGTCTTGTACACTGAAAGAGCATATGAGGACTCACACAGGAGAGAAGCCGTTCCTCTGCTCGCAATGTGGTCGAGGATTCAGTCAAAAGACTAATTTGGCCCAGCATATGAGAAGACATCAAGGATTAAAGCCTTTTAAATGTGAAAACTGTGAAAAGAGATTCGTATCAAAAGGAGAACTAGACGCCCACAACCGAAAACACAGCGGTGCCCACCCGTTCGTCTGTGACGACTGCGGCAATGGCTTCACAACCTCAAGTGCACTAGTCAAACACCGTCGCATACACACCGGAGAGAAACCGTACCAATGTGATCTCTGCCCCATGAGATTTGCAGCGTCCGGTACCTTGAAAAACCACCGTAGAACCCATACCGGGGAACGACCGTTCCAATGTTCATACTGTGAAAAAGCCTTCGTCCAACGCAACGATTTGATTTCTCATATCCGATGTCATACAGGCGAAAAGCCCTACGTTTGTACTCAGTGTGGCCATTCATTTAGAAAGGCTTCCGGATTGAAGAGTCATGTCAAAATGCATGTGAAAGAGCCAGTGAATATGCTACAAGGTGTCAGTGTCATGATAAACGGTATGCAGTGTGCGGAACAGTGA
- Protein Sequence
- MEISVQTFDRICRVCLIECADMKSLFTKMDDGDRNLFELLAFTANINVKLEDDLPKQVCGECESVMCKADAFKRRCLYSDTILNNIYENSVNNGDPSIIDEKCSIKAENDDITQKLSSYVSFRSCNIENNSPQNSIDKKNILFQDASSYAADTSLYKLNDSKVPENTGNTVKEEISLNFNDDIDFSDHFDDGTQCETTPLELKEEPLKIEGKTYSCCCGQTFDLKDKYKNHLKLKNCNKYKKILKNVDKSKLIPIKNKIECVDCHRKFSTPNAWSLHQRVHQDKRLSDKKSSLLICKFCLCEFKSEASLATHIRKHEKTVNSKTETYQCSFCLRKFKNKTSLSAHILRHEETDRIKHVCKVCKREFKYKAYLENHILTMHSKKNGISCEVCGQSFPNEESLELHKDSHKNEKKHRCTVCNKAFVMSCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYVCTQCGHSFRKASGLKSHVKMHVKEPVNMLQGVSVMINGMQCAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785389;
- 90% Identity
- -
- 80% Identity
- -