Pumb022299.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982937.1:2490362-2492575[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-08 3.3e-05 24.3 0.1 2 40 16 54 15 59 0.88
Sequence Information
- Coding Sequence
- ATGGTGagaaattataaaagaaaaacaacaaaaagttCCTATAGCAAGGACAAGTTGCATGCAGCTGTACTGGCAGTCCGAAATGGTACATTAACTGGATATAAAGCAGCGCAACTCTACCGAATTCCACGGATGACCATCATGGACCATGTCCACAAAAAAAGTTCTTCAAGTACACTAGGGAGAAAAACCACTCTGCCTTTGTTGATTGAACAAAATCTCGCTTCCTGCCTCCGTACAATGGAAAAATATGGTTTTGGCCTTAGTAGGGCAGAATTTTCCCAGATGGTTGGAGAATATGTAAAGCAGAACAATCTATCAACTTGTATTAAAAATGGAATACCGGGAAAGGACTGGTTGGCCTCATTTCAAAATCGACATAACCTTTCGGTTAAAAAACCACAGGCTGTTGAATACGGTCGGAAAACAGCGGTTGATCCATTTGTGGTTTATGAGTATTTTGATTTAATCAAAACAACTATAATGGAATTAGCTTTAGCAGACAAGCCTAATGCAATCTGGAACTTAGACGAGACCAGTTTTTCAAAAGACCCTTTGAAAACCAAAATTGTAGGTCATAAAGGCCATGCAGCAACGAGAGTTATAGCAACACCTGGGAGAGATAATACGACGGTGTTACTAGGTGCAAGTGCGATTGGAGAAAAAACACCTCCCCTAATTGTCTTCAAAGGAAAATATGTTTGGGACGAGTGGACTTCCCCTGATGCATTTCCAGATTACCTGGATCCGTCTCCTTATCTCGGCTACAGTTTTGAGAACGCTATGCAATCCTTAGAAGATACCAAAAAGCAAGCATTAAGAAAACGTTGCGTAAAATACGGCTGGATCCATTTCGTTAAATTACAGTTTGCACAGCGCATGCTCTAG
- Protein Sequence
- MVRNYKRKTTKSSYSKDKLHAAVLAVRNGTLTGYKAAQLYRIPRMTIMDHVHKKSSSSTLGRKTTLPLLIEQNLASCLRTMEKYGFGLSRAEFSQMVGEYVKQNNLSTCIKNGIPGKDWLASFQNRHNLSVKKPQAVEYGRKTAVDPFVVYEYFDLIKTTIMELALADKPNAIWNLDETSFSKDPLKTKIVGHKGHAATRVIATPGRDNTTVLLGASAIGEKTPPLIVFKGKYVWDEWTSPDAFPDYLDPSPYLGYSFENAMQSLEDTKKQALRKRCVKYGWIHFVKLQFAQRML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_01153873;
- 80% Identity
- -