Pumb004366.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- clz9
- Assembly
- GCA_963891755.1
- Location
- OY982917.1:14925268-14926752[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 1.3e-06 28.8 0.0 3 38 16 52 14 59 0.91 2 2 5.1 6.7e+03 -2.2 0.1 28 34 464 470 464 471 0.89
Sequence Information
- Coding Sequence
- ATGCCTcgaaaatatattaagaaaaaaggACCAGCTTACACCATTGAAACATTACAAAGAGCTGTGCAAGAAATTAAAGAGAAAAAGACTCCTTTTCGACAGGCGGCAGAGAAGTATGGCATTCCCAAAGCTACCCTTTTTGATCAAGTAAAAAAAGACTGTGTTAATACCATGCCCAAAAGAGGAAAGAAGTCAGTTTTTAATGAATCGCAAGAAAATGAACTGGTCGAATTTATTCTTAAATCTTGCAAAGCCTTTTTTGGGATAACAATTCCTACCCTAAGAAAAATAGCATTTGATTTTGCCGCTGCTAATAACATAGCAAATGACTTCAATAAAGATACTAAAATGGCAAGCATAGAttggtattataattttatggcAAGACACCCCAATATATCACTTCGAAGACCAGAAGCtacttcaataaatataatcacagcatttaatcaagaagaaacagatatattttttgagaatttaaAAACACTAATGATGAAATACCAATTTAAGTCGAATTCAATCTACAATGTTGATGAAACGGGGATTAGTACTGTACAACGAAATTCCAGGATTCTAGCACCGAAAGGATTAAAACAAGTAGGTAAATGTACCAGCGCAGAACGTGGTTCCTTAACCACagttataaattgttttaatgcTGCAGGCACATACATTCccccattttttatatttaaaagaaagcgAATGAATGCACTGCTTATGAAGGACAGTAATAGTAACATGGTGGCTTGCGTTTCTGACTCAGGCTGGATAACTGAATCGATTTTCGTAGATTGGCTTCAGCATTTCAAAGCATATGCAAAACCATCTGCAGATGATCCTATTTTACTAGTACTGGACAACCATGAAAGCCACGTTAGTTTGAGAGCTCACGAATTTTGTCGCAAGAATTATATTCATGTTTTAACTTTGCCACCTCACACATCCCATAGAATGCAGCCTTTAGATTTAACTTTCCATGGCCCACTAAAAACTGCATATAATAGAGAATGTGAATCCTTCATGGTCAACCATCCAGGCACCAAAATTACGGCATATGATGTTGTCGGCCTTTATACAAAGGCTTTTAATAGAACCGCAAGTACTGACAAAGCTATGAATGGCTTTAAGTCTGCTGGAATTTGTCCAATGGatcaagataaatttaaaaacacttCTGAAAGTTTTGGTGATATTTTTGCATCAGTCTCTCCTCTTGAACAACGGATACAAACAAATACCCATAATTCAAGCCAACATGAGTCCCAGAATGAATCTCAAGTTGTCTGTGATGTTGCCTATGAAAATATTTCTGATCCAATGGAAACTCACGAAATATTTCAACTTTCCAATAAAGACGCTAGCTTTGACGATTTAAACGAAACAATACCTACGTCTACATTAGTGGCTGATGATAGTGAAGCTGGTGGTAATCAAAGTCAACCAAGGTCAACCTTGTCCATCTCCCTTAGTACCACTTAG
- Protein Sequence
- MPRKYIKKKGPAYTIETLQRAVQEIKEKKTPFRQAAEKYGIPKATLFDQVKKDCVNTMPKRGKKSVFNESQENELVEFILKSCKAFFGITIPTLRKIAFDFAAANNIANDFNKDTKMASIDWYYNFMARHPNISLRRPEATSINIITAFNQEETDIFFENLKTLMMKYQFKSNSIYNVDETGISTVQRNSRILAPKGLKQVGKCTSAERGSLTTVINCFNAAGTYIPPFFIFKRKRMNALLMKDSNSNMVACVSDSGWITESIFVDWLQHFKAYAKPSADDPILLVLDNHESHVSLRAHEFCRKNYIHVLTLPPHTSHRMQPLDLTFHGPLKTAYNRECESFMVNHPGTKITAYDVVGLYTKAFNRTASTDKAMNGFKSAGICPMDQDKFKNTSESFGDIFASVSPLEQRIQTNTHNSSQHESQNESQVVCDVAYENISDPMETHEIFQLSNKDASFDDLNETIPTSTLVADDSEAGGNQSQPRSTLSISLSTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01490072;
- 90% Identity
- -
- 80% Identity
- -