Pumb028234.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982946.1:5294687-5296012[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-09 1.5e-06 28.6 0.1 1 39 16 55 16 61 0.91 2 2 0.27 3.6e+02 1.8 0.2 24 40 346 362 345 365 0.85
Sequence Information
- Coding Sequence
- ATGCCACGTAACTACTCCCGAACCTCTTCGCGTGCCACTTCCTATACAAAAGAAGCACTGCAATTAGCcatacagaaaataaataataaggagCTCACCTATGCAGCCGCTTCAAAAATGTACGGCATACCTACATCCACACTTAGTGATAGAATCCTGAAGAAAACAGCAATAGTAAGTAATACCCTTGGTAGGCCGACAGCTATCCCAATGGCATTAGAATCTAAACTGGCAGACTGCTTACGAACGACTGCCTCGATtttgactaataaaaatatcactgACGTATATCTTTCTAAAAAAGGCAAAGGAGTAGGAAAAAGATCTCGAACTGACAAAGAAAATGATTTGAAAGTGGACAAGTATGATGAACACAGGAAGAAAACTGTATTATATAAATTGGATAATAAATCTGGCCAAACGACAACTACAAAGACAGCTATGAAAAAGCGCAAAAGATCTAATAGCAGTGTAACAACAGTTGAAAGTATCCAGATGAGCGTACATAGTGATTCTGACTTATTAGATTCTTTGAGCGACATATTATCCGACTGTGATAAATtgactgattttaattattatgaggAAAAAAAGACTGACTTAGAAGCTACATCTAGAGaacaacaaattgaaaaaattgttaaagaaaTACATGACATGGATaataatcaaaagaaaaaagcAAGCCAAAGAGACGATACTTGCAAAGATAGATGTGAAATAGAAGAAATTCAAACGATAGAGACAAACATAAAagcaaatgataataataaagtgACTATCTTATCGTCTGTAAAAATCACACCAGAAAACCAAGCTTTCTATAGAATTTTACCCGAAAGTTTACAACTAAAACCAATTGATAAAGATTTAGATTTGTTTACAAACCAAAAGCGAAAACTGACACAAAGTACAAGCGTATCTAACATACCAAAGAAAAGAACTAAGAAAGCTAATTGCCCTACAAAAACAACGATAAAATATCAAAAGGATAAAGATGATGATGGTGGGGTAAAAAGTGATATTGATGATTCAAAGACTTACAATATTGGAGATACAGTTCTCGTTAGATATTTCAAACGAACTTGGACATATTATGTCGGtatcattgaaaatattaatatcaactCAAACCCAAATATGTATAAGATAACATTCTATAGAACTATTGGCAAGAAAAACAACCTAAAATTTGTTATTCCTAAGCGTAAAGATCAAGACTACGTACCTGATTCTAATATAGTTAAGATGATAGAACTACTACAGATAAATGAATATCCTTTTGAGTATACCCTTATGAATGACGATGATgagaatttcttttaa
- Protein Sequence
- MPRNYSRTSSRATSYTKEALQLAIQKINNKELTYAAASKMYGIPTSTLSDRILKKTAIVSNTLGRPTAIPMALESKLADCLRTTASILTNKNITDVYLSKKGKGVGKRSRTDKENDLKVDKYDEHRKKTVLYKLDNKSGQTTTTKTAMKKRKRSNSSVTTVESIQMSVHSDSDLLDSLSDILSDCDKLTDFNYYEEKKTDLEATSREQQIEKIVKEIHDMDNNQKKKASQRDDTCKDRCEIEEIQTIETNIKANDNNKVTILSSVKITPENQAFYRILPESLQLKPIDKDLDLFTNQKRKLTQSTSVSNIPKKRTKKANCPTKTTIKYQKDKDDDGGVKSDIDDSKTYNIGDTVLVRYFKRTWTYYVGIIENININSNPNMYKITFYRTIGKKNNLKFVIPKRKDQDYVPDSNIVKMIELLQINEYPFEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -