Pumb000969.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- jarid2b
- Assembly
- GCA_963891755.1
- Location
- OY982916.1:17853423-17858660[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.51 1.7e+03 0.3 0.0 39 68 45 74 39 85 0.77 2 2 4.3e-21 1.4e-17 64.7 0.1 9 89 462 539 455 539 0.91
Sequence Information
- Coding Sequence
- ATGCAAAGCTCAAGAATGTCAATGTCAATGTCGAGCACTAATGATGAATATGTCCGCTTACAACATAAAATACAAACCTGGTTGAGGAACACCTCTCGAAATGAAAATGATGATTGTTTAGAGGAAGCGACCATGGTTCAGTTAGACGGAGGTATTCCGGTGCCATGTATCGCACAGAAGTGGCGTTCCGTCCAGGACGTCATCAATGCACCCAAAGAAGAGTTGGACTCTCGCTGCCAACAATGTAGGCCTTGCATAAGGATTAAGAAACTAATTAAACTGTCGGCACTGCTCAAAACCCAGGTAAAGATAGACTTGACGAACGACAGCAATCCTCAACTACTTAGTGAAAATGAAGACacagaaaataatgaaaccatGGTTTCACCAGACGCAGACCAAGGCCATCTTTACCTGGACCTGCTTCCAAAACATCCTCATGTCATGATGAAGCTGCGAATTCACATGGTACACGGAAAAGAACTGATGTCCGCTTGTTTGATTCCAAGAAATGATTCACGAAAGAACAAACAAGAGTTCTTGCTTCAAGAACAAGAACACCTACTTGATCAGTTAATCGAGACTTTAACAATAAGTCTTAACGATAAAGCAGAAAATCGTAGGGTAAGCATTTCTTCAATTGAAAGCATTGAGGGAAGTGATTTCGCAATTCCGCCTGGCAGAGAGCACGAGGATCGTCTCGTTGAAGAAAGGAGGAAAGTGAGGCAAAAAAAGTTGGCCGCTGCTAAGAAGCGGATAGCAGATTCAAATGAGATGCGTGTGTTGCGTATCAAGGCCGAAAAAGAACTGGAGGTAGCCCTCATCGAGCAggagaaacaaaaagaaatatcgCGAATTGAAGCCGAGAAGAGGAATATCGAGGCAGAGAAAAATACTATAGAAAAGGAGGTCTCCCGCATTCAGGCGCAAGTTAGTCGGTTGGAAGAGGAAAAAGAAGCCGAAATAGCACAACTCAGAGAACAATTGAGAATTTCAGAATTAGAGGCTGAGCGCCGCAAGAACTCTGATGTTGATGGTATGGCAAGTGTCCTGGACAAAGAAAAGGATGCTAAGCCAATGGATGGTGGACCTAGTTCCGACGCCAACGCGCCTAGTACAAGTGGCTTGCGACAGACTCCTGAAGGTGGAGGACTCGTGGACGCGCCGACATTCCGCCCTACAAAAGAAGAATTTAATGATCCGTTTGAATACTTTGAGAAGATCTGGTCAGAGGCAGTTAAATTTGGCATCTGCAAAGTGGTGCCTCCTGAAGGATGGAAACCGAAGTGCCGAATAAAAGATGACATTAGATTTGATGTTACCAATCAATATATTTCACGGTTATTCTGCCGATGGGGGCCGGCTGCGAGGGAACTTTGTGCTATAAAGCTTTGTCTTCAGCAGCAAAATGTTAATTTCACTCGTCCGCCTTTGCTAGATGGCGTGGAAGTAAATTTACCTAAGTTATACCACCTCGTGCAACGGCATGGGGGACTCCAAACAGTTATTAATAAGAAGCGATGGGGTAAAGTTGCAGAAGACATGAAGTTTGTCAAGAATCTAAACACTGAGAGAAAACTAGACCACATTTATGTGAAGTACCTACTCCCTTACGAAACCCTATCACATCAGGAAAGGCAGGAAATTATGAGAAAGGTGGAAAAGGCGTGGAATAggaaaaaccaaaaacttttaGACCGTGCAATGAACCCATTGCATCGTCAGAAACGAATGCTTGGCTTGTCAGACTCTTCTGATGACGAAACTGAAGACGAAGACACCGCTTTTGCTGTGAACGAAGCCGAAGACTGCATAATAAAGGGTGCAGTAATGAATGCTGCTAAATTTAAAAGATTGGCCACTAATGCATACGAAAACATTTTCGGACAACGCTCTGAAGGCTCCGAGCCGCTCTCTCTGGAGCAGATAGAAGAGCAATACTGGCGCCATGTGTTATTAGGCACAGAGCATCTATGCGTCCACACGGCTGCAATCGACACAGGCGAAGAAGGCCATGGATTTACTAAGAATAGGAACGAAGCTTTTGGACGTCACCTATGGAATTTAAAGATGATAAGCCAGAACCCCCAGAATATTCTCCGTTATTTGGGCCCAGTATTAGGCCTTACTGTGCCAACTCTACACCTTGGAATGTTGTTCTCAACCAGCTGCTGGCACAAGGATCCGCATACTTTACCATGGAAGGAGTACCAGCACAGCGGACCCACTAGAATCTGGTATGGAATACCGAGTGAGCAGACTGATAATTTTAGAAAGGCTGTAGAAACTCTTTGCCCGACATCATGTCAGAATAAAGGTCTGTGGTTGTCCACGGACATTGCGATGATTCCGCCGCAGTTACTGCGCGAGCATAACGTGACGCTCTCCCGCGTCGAACAGGAGGCTGGAGAGTTCATACTAGCTTTCCCTAAGGCTTACACATGCTTCATCAGTACCGGCTACACTGAGTCTGAGAGCGTCTACTTCGCGCCAGTGTCTTGGCTCGAAAACATTTATGAAGCATTCCAGGAAGCCCGCGAAAGTTGCGAGCCAACAATGTTTTCAATGGAACAACTGCTCTTCCTCATCGGCAAGGACCAGCGCACGGAAGTGCCTGTACTGAAGATCGTTCAACCGATCTATGACAAAATGCTGCGCGATGAAGTCACCAACAGGCAGATGCTGCAAGAAAGAGGATTGACCTTCGTCAATCAGaaTTCTACGTCCACATCATCATCACGTCGTAAGCGTGCCAGTGGTGCTGCATACAACGCCCGCGACCATGATGAGTGTGAATACTGCAGGGCTACACTGTTTCTGTCTAAGGTGAAAGGGCTAACTGGCAAGAATTCTTCCCTGTGTCTGGAACATGCTCTAAAATTGTTAGACACTGGTAAGTACAAGAACAAGAATGTTTCACTGTTGGAAGTGCTCGTGTTCGTTAGTGTCAAGGAGCTCAACACCATCGGCGACGATATAAAACTTCGCATTGAAGCCgatttgaatacaaaataa
- Protein Sequence
- MQSSRMSMSMSSTNDEYVRLQHKIQTWLRNTSRNENDDCLEEATMVQLDGGIPVPCIAQKWRSVQDVINAPKEELDSRCQQCRPCIRIKKLIKLSALLKTQVKIDLTNDSNPQLLSENEDTENNETMVSPDADQGHLYLDLLPKHPHVMMKLRIHMVHGKELMSACLIPRNDSRKNKQEFLLQEQEHLLDQLIETLTISLNDKAENRRVSISSIESIEGSDFAIPPGREHEDRLVEERRKVRQKKLAAAKKRIADSNEMRVLRIKAEKELEVALIEQEKQKEISRIEAEKRNIEAEKNTIEKEVSRIQAQVSRLEEEKEAEIAQLREQLRISELEAERRKNSDVDGMASVLDKEKDAKPMDGGPSSDANAPSTSGLRQTPEGGGLVDAPTFRPTKEEFNDPFEYFEKIWSEAVKFGICKVVPPEGWKPKCRIKDDIRFDVTNQYISRLFCRWGPAARELCAIKLCLQQQNVNFTRPPLLDGVEVNLPKLYHLVQRHGGLQTVINKKRWGKVAEDMKFVKNLNTERKLDHIYVKYLLPYETLSHQERQEIMRKVEKAWNRKNQKLLDRAMNPLHRQKRMLGLSDSSDDETEDEDTAFAVNEAEDCIIKGAVMNAAKFKRLATNAYENIFGQRSEGSEPLSLEQIEEQYWRHVLLGTEHLCVHTAAIDTGEEGHGFTKNRNEAFGRHLWNLKMISQNPQNILRYLGPVLGLTVPTLHLGMLFSTSCWHKDPHTLPWKEYQHSGPTRIWYGIPSEQTDNFRKAVETLCPTSCQNKGLWLSTDIAMIPPQLLREHNVTLSRVEQEAGEFILAFPKAYTCFISTGYTESESVYFAPVSWLENIYEAFQEARESCEPTMFSMEQLLFLIGKDQRTEVPVLKIVQPIYDKMLRDEVTNRQMLQERGLTFVNQNSTSTSSSRRKRASGAAYNARDHDECEYCRATLFLSKVKGLTGKNSSLCLEHALKLLDTGKYKNKNVSLLEVLVFVSVKELNTIGDDIKLRIEADLNTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -